Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24170 204 / 2e-68 Got1/Sft2-like vescicle transport protein family (.1) AT5G23550 174 / 4e-56 Got1/Sft2-like vescicle transport protein family (.1) AT4G26550 51 / 3e-08 Got1/Sft2-like vescicle transport protein family (.1) AT5G56020 50 / 1e-07 Got1/Sft2-like vescicle transport protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000361 [exp] 283 / 2e-99 AT5G24170 200 / 1e-66 Got1/Sft2-like vescicle transport protein family (.1) Lus10029537 [exp] 179 / 9e-58 AT5G23550 275 / 7e-96 Got1/Sft2-like vescicle transport protein family (.1) Lus10039619 [exp] 175 / 1e-56 AT5G23550 279 / 3e-97 Got1/Sft2-like vescicle transport protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G012700 [exp] 219 / 5e-74 AT5G24170 224 / 3e-76 Got1/Sft2-like vescicle transport protein family (.1) Potri.015G017300 [exp] 215 / 2e-72 AT5G24170 220 / 1e-74 Got1/Sft2-like vescicle transport protein family (.1) Potri.004G135000 [exp] 179 / 6e-58 AT5G23550 224 / 1e-75 Got1/Sft2-like vescicle transport protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04178 [flax] [poplar] Got1 Got1/Sft2-like family
Representative CDS sequence Show only first row Show all	>Lus10019023 pacid=23152673 polypeptide=Lus10019023 locus=Lus10019023.g ID=Lus10019023.BGIv1.0 annot-version=v1.0 ATGAAGAAATTGAAGCAGTTCATAGTCGGGGACGAAGATGGAGACAGAGGACAGAGCTTCTTGGAGGAAGAAAATTCCGATGATTTCGGTTCCCTTTCTG CAACGCAGAGAATGTACGCATTTGCTGCTTGTCTGGTTGCTGGCCTGGCTTGTATGCTCATGTCATTGGTTGTGTTCGTGAAGCCCATAAAGTTTGCATT ATTGTTCACTTTTGGTAACATATTGGCAGTAGGAAGCACAGCCTTTCTTATTGGAACTGGACAGCAACTCACTATGATGTTTGATTCTACCCGTTTATAT GCCACATCCATTTATCTTGGATCGGTCGTCGTCTCTCTCATATGCGCCCTCTTGGTCCATAACAAGGTTCTAACACTAATTGCAATCATTTGTGAAGTCT GTGCCTTGATTTGGTACAGTTTGAGCTACATTCCATTTGCTCGAACAATGATATCCAACTTGATGGTTCGGTTATGTGACACTGAACTATGA
AA sequence Show only first row Show all	>Lus10019023 pacid=23152673 polypeptide=Lus10019023 locus=Lus10019023.g ID=Lus10019023.BGIv1.0 annot-version=v1.0 MKKLKQFIVGDEDGDRGQSFLEEENSDDFGSLSATQRMYAFAACLVAGLACMLMSLVVFVKPIKFALLFTFGNILAVGSTAFLIGTGQQLTMMFDSTRLY ATSIYLGSVVVSLICALLVHNKVLTLIAIICEVCALIWYSLSYIPFARTMISNLMVRLCDTEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24170			Got1/Sft2-like vescicle transp...		Lus10019023 [exp]	0	1
AT2G31440			unknown protein		Lus10027036 [exp]	1.4	0.8148
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10034753 [exp]	4.0	0.8120
AT3G26935			DHHC-type zinc finger family p...		Lus10035177 [exp]	6.7	0.8047
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10016265 [exp]	7.4	0.7916
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10034573 [exp]	10.9	0.7820
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10035469 [exp]	11.0	0.7459
AT2G19080			metaxin-related (.1)		Lus10020010 [exp]	11.5	0.7262
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10037995 [exp]	13.6	0.7901
AT1G75420			UDP-Glycosyltransferase superf...		Lus10024281 [exp]	14.0	0.7375
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10029109 [exp]	15.1	0.7938

Compare expression of checked genes

Lus10019023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.