Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06160 713 / 0 ATO ATROPOS, splicing factor-related (.1) AT4G01000 47 / 2e-05 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000360 [exp] 939 / 0 AT5G06160 743 / 0.0 ATROPOS, splicing factor-related (.1) Lus10010125 [exp] 50 / 3e-06 AT4G01000 333 / 6e-111 Ubiquitin-like superfamily protein (.1) Lus10012629 [exp] 45 / 0.0001 AT4G01000 327 / 2e-108 Ubiquitin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G017200 [exp] 793 / 0 AT5G06160 720 / 0.0 ATROPOS, splicing factor-related (.1) Potri.012G012800 [exp] 788 / 0 AT5G06160 718 / 0.0 ATROPOS, splicing factor-related (.1) Potri.014G098100 [exp] 47 / 3e-05 AT4G01000 135 / 5e-35 Ubiquitin-like superfamily protein (.1) Potri.002G170200 [exp] 46 / 5e-05 AT4G01000 125 / 2e-31 Ubiquitin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12108 [flax] [poplar] SF3a60_bindingd Splicing factor SF3a60 binding domain CL0361 [flax] [poplar] C2H2-zf PF11931 [flax] [poplar] DUF3449 Domain of unknown function (DUF3449)
Representative CDS sequence Show only first row Show all	>Lus10019024 pacid=23152684 polypeptide=Lus10019024 locus=Lus10019024.g ID=Lus10019024.BGIv1.0 annot-version=v1.0 ATGTCGTCGACTCTGCTGGAGGTCACTCGGGCTTCTCATGAGGAGGTAGAGAGGATGGAGCGCCTCATAGTGAAGGAGTTCCAGAACGATCCCACTAGCA GCAAGGACCGCCTCCTCCAGGGCCACCGCGTTCGTAACATGATCGAAGAGATTGTCTCCACCAGCCATAAGCTCGTTGATATATACGAAGATAAGGATCA TGCGAGGAAAGACGAGATTGCGGCTCTGGGAGCTCAGGCAGCTGGCGGGAATGTGTTTAGTACATTTTATGATAGATTGAAAGAGATTCGCGAATACCAT AGAAGGCATCCGGCTGCACGTGGTGTGGTGGATGCGACGGATCCATATGAGGCACTCCTGAAAGAGGAGCCAGTCATTGAATTCACTGGGGAGGAAGCTC ATGGGAAATATCTCGACTTGCACGAACTATACAATCAGTTCATCAATTCAAAATTTGGGGTGCCTCGTAGTGATAAAAAAGGAACGGAAGAGTCACGGAT TGAATACGCAGCCTATCTCAATGTTTTTTCTAAACCACATAAAATTGATCGTAAACTCAAGTCAACCAGGCAATACAGGGAATACATTGCGAATCTTTTG GAGTATTTGGTTTATTTCTTCCAACGTACAGAGCCATTGCAAGATCTTGATAGAATCTTCTCAAAGGTCGTAACTGAATTTGAAGAGCAATGGAAAGATG GCAAGGTAACTGGATGGGAGGGGGCTCAGGAAAATGGCCCAGTTCCAGGTCTAGATGCAACAATTGATCTTGATTATTACAGTACAGTAGAAGAGCTGAT GGAAGTGGGTCCTGAAAAATTAAAAGAAGCGTTGGCTTCATTGGGATTAAAGACCGGGGGCACCCTTCCGCAACGTGCAGAAAGACTCTTTCTCAAAAAG CATACTCCTCTGGAGAAATTGGACAAGAAACATTTTGCCAAAGGTTCGCGCAGACCAGAACTGAATGGAGCTGCTGTTGGTTCGAATGAGCATAACAATT CGAAGGAAATAGCTTTGATGGAGGCAAAAATTATCAAAGTGTGCGGCTTATTGAGTGAGACAATTGAAAGGACAAAAGAGAATGTGGAGAAGAAGCAGGC TCTGACATATGAGGAAATGGAAACAGAACGTCAGGAGGAGGAGCTGCAAGCAGAAAGTGAAAGCGACGACGAAGACCAGCAGATCTACAATCCCCTCAAG TTGCCTATGGGATGGGATGGGAAGCCTATACCTTACTGGCTTTATAAGCTTCATGGGCTCGGTCAGGAATTCAAGTGCGAGATATGTGGTAATTACAGTT ACTGGGGACGTAGGGCTTACGAGCGACACTTCAAAGAGTGGCGGCATCAGCATGGAATGCGTTGTCTAAACATCCCAAACACCAAGAATTTCAACGAGAT CACGTCCATTGAAGAAGCGAAAGAGTTGTGGAAAAGGATACAAGAGAGGCAAGGAGTGAACAAATGGCGTCCAGAATTGGAAGAAGAATACGAAGACAAA GAAGGCAACATCTATAACAAGAAGACCTACACTGATCTCCAGCGCCAGGGCTTAATATGA
AA sequence Show only first row Show all	>Lus10019024 pacid=23152684 polypeptide=Lus10019024 locus=Lus10019024.g ID=Lus10019024.BGIv1.0 annot-version=v1.0 MSSTLLEVTRASHEEVERMERLIVKEFQNDPTSSKDRLLQGHRVRNMIEEIVSTSHKLVDIYEDKDHARKDEIAALGAQAAGGNVFSTFYDRLKEIREYH RRHPAARGVVDATDPYEALLKEEPVIEFTGEEAHGKYLDLHELYNQFINSKFGVPRSDKKGTEESRIEYAAYLNVFSKPHKIDRKLKSTRQYREYIANLL EYLVYFFQRTEPLQDLDRIFSKVVTEFEEQWKDGKVTGWEGAQENGPVPGLDATIDLDYYSTVEELMEVGPEKLKEALASLGLKTGGTLPQRAERLFLKK HTPLEKLDKKHFAKGSRRPELNGAAVGSNEHNNSKEIALMEAKIIKVCGLLSETIERTKENVEKKQALTYEEMETERQEEELQAESESDDEDQQIYNPLK LPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAYERHFKEWRHQHGMRCLNIPNTKNFNEITSIEEAKELWKRIQERQGVNKWRPELEEEYEDK EGNIYNKKTYTDLQRQGLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10019024 [exp]	0	1
AT4G32910			unknown protein		Lus10011625 [exp]	1.0	0.8924
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10003795 [exp]	2.4	0.8633
AT5G65540			unknown protein		Lus10035950 [exp]	3.2	0.8431
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10030581 [exp]	3.6	0.8401
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10017026 [exp]	5.0	0.8539
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10010156 [exp]	5.3	0.8376
AT2G36740		ATSWC2	sequence-specific DNA binding ...		Lus10020396 [exp]	5.5	0.8185
AT2G42810		AtPP5, PP5.2, P...	Arabidopsis thaliana protein p...		Lus10031381 [exp]	6.7	0.8366
AT1G26190			Phosphoribulokinase / Uridine ...		Lus10030919 [exp]	8.0	0.8598
AT1G55150			DEA(D/H)-box RNA helicase fami...		Lus10015627 [exp]	8.5	0.8450

Compare expression of checked genes

Lus10019024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.