Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53430 1139 / 0 SET29, ATX5, SDG29 SET domain group 29 (.1) AT4G27910 1051 / 0 SDG16, ATX4 SET domain protein 16 (.1) AT3G61740 778 / 0 SDG14, ATX3 SET domain protein 14 (.1.2) AT2G31650 161 / 6e-40 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT1G05830 95 / 2e-19 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT5G42400 93 / 8e-19 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT3G14740 78 / 6e-15 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT1G76710 72 / 1e-12 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT2G23380 72 / 2e-12 SET1, SDG1, ICU1, CLF SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) AT4G30860 71 / 2e-12 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005007 [exp] 1148 / 0 AT4G27910 611 / 0.0 SET domain protein 16 (.1) Lus10012626 [exp] 728 / 0 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10010121 [exp] 654 / 0 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2) Lus10030262 [exp] 303 / 1e-85 AT3G61740 742 / 0.0 SET domain protein 14 (.1.2) Lus10004012 [exp] 284 / 5e-83 AT3G61740 424 / 2e-136 SET domain protein 14 (.1.2) Lus10025172 [exp] 97 / 8e-20 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10026725 [exp] 94 / 3e-19 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025508 [exp] 94 / 4e-19 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10016051 [exp] 94 / 5e-19 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G014300 [exp] 1258 / 0 AT5G53430 1322 / 0.0 SET domain group 29 (.1) Potri.012G013900 [exp] 1209 / 0 AT5G53430 1423 / 0.0 SET domain group 29 (.1) Potri.014G098400 [exp] 839 / 0 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.002G170600 [exp] 812 / 0 AT3G61740 1140 / 0.0 SET domain protein 14 (.1.2) Potri.005G260100 [exp] 97 / 5e-20 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.002G001000 [exp] 96 / 8e-20 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.002G232800 [exp] 93 / 1e-18 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.014G146300 [exp] 92 / 1e-18 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.018G023000 [exp] 85 / 3e-16 AT1G05830 160 / 2e-39 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.005G195400 [exp] 74 / 2e-13 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0390 [flax] [poplar] PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10019026 pacid=23152717 polypeptide=Lus10019026 locus=Lus10019026.g ID=Lus10019026.BGIv1.0 annot-version=v1.0 ATGCCGAGTCTCAAGCGCTGTAAACTCGACGACTCGGCATGTGAACCCGACGACACAACCAGGAACAAGAAGAAGAAGCGGAAGCTCAACGAAGGAGGAG GAGGTTATTGCCCACTCAATTTCCTAGGCCAGGTCGCGAACGGGATAATTCCAGTTGGTTTCCGCGGGATTCTTAGCTCCGCTGCTCTCGTCGGCGGGGG TCACATAGGTTTCGCCGCAGCTTCCTGGTGCACTGAGGTGTCCTACTCGCCTCCAGAGGAGGACGCGGAGTTGGACTCTCAATTTAAGGTTCCGGAGGCC AGTAACCCGGCCGAGGAGGTTTCTCGACCTCCGATTGTCCGGACGTCAAGAGGGCGAGTTCAGGTACTCCCTTCGCGGTTTAACGATTCGGTTCTTGAGA ATTGGAGGGACGAGGGAAGGACTAGGTTGCAGGACGATAGGTTCCAGGAGGACGATGTTAATGTTGTCCAATGTGATGCCACTACCAGTAAGAAGTCGAA AGAGAAAATGAAGTTCAGTTCTAAAACACAGAAAATAGTTTCTAGGAACGCCAAGAATCAACGGAGCTATGAGAGGGCTGCTTATTTTGATAGTAGAGGA CGGGCAGCACTATTTGACGAAGATGACATGTTACGAGTGGGGTTCCGGAGTTTCGACGTAAAGAAGAACTCTACTTCTCGGAGTACTCTGAGCTCGCTGC ATCATCAAATACCAGTTGATAACAAATGTGGAATCGTTGATTTATATGGCAGTTCAGAGAGGTGTAAGATGAACGACGGGATGTTTGGACCTGAAGATTT CTACTCTGGTGATATAGTCTGGGCAAAGGCAGGAATGAATGACCCCTATTGGCCGGCTATTGTGATCGACCCTATGAGTCAGGCACCTGAGCTGGTACTA AGGTCTTGTATACCAGATGCAGCTTGTTTGATGTTTTTGGGTTATTCTGGGGACGATCAAAGGGATTATGCTTGGGTGAGGAGGGGCATGATCTTTCCAT TTATGGATTTTGTGGACAGGTTCCAGAATCAGCCATTGAATGCCTACAAGTCCAGCGATTTCCAGATGGCAATTGAGGAGGCGTTCATGGTAGAACAGGG TTTTACAGAGAAGTTGATGCAGGAAATAAATCTGATTGCCGGGAATACCACTTGCGAGGAACCAGTGGCTAGATGGTTCCAAGAGGCCAGTGGTTCAAAC CAGTATCATGAGATGCAATCGCCAAACCAGGCAAGTATCCTGGGCTTGCTTGTGATGGTGATGAAGAAACATTATAAGTGGTCTTGTGAAGGATGTGGGA TAGGTCTCTCTCCTAAATTGTTGAAGAATATGAAAGTTGCAATTCCAGGAGGCCAACTGTTATGCACTACTTGTGCCAGATTAACAAAGTCAAAACATTA TTGTGGAATATGTAAGAAGATATGGAACCATTCAGAGAGTGTCAGCTGGGTACGATGCGATGGATGTAAGGTTTGGGTTCATGCAGAATGCGACAAAATT TCCAGCAATCGATTTAAGGACTTAAGTGCAACCGATTACTACTGTCCTCCTTGTCAAGCGAAGTTTAATTTTGAATTGTCAGATTCAGAAATATATCAAC CAAATGCCAAGCTGAACAAGAGTATAGGGAAACAACCTCTGCCTAACAAAGTTTCTGTAATCTGTTCCGGTGTAGAAGGCATATACTACCCAAGCTTCCA TATGGTCGTCTGTAAATGCGGGTCTTGTGGGCCAGAGAAGCAAGCACTGAGTGAATGGGAGAGGCACACAGGTTCCAAAATTAGAAATTGGAGGACTAGC ATCAGGGTGAAAGATTCCATGCTCCCTCTGGAACAATGGATGATGCAGTTAGCAGAGTTTCACGCACGCAATGTATCGACCAATCCCTCAAAAAAGCCCT CCATAAAAGACCGGAAACATAAATTGCTAGCATTTTTGCAAGAGAAGTATGAGCCTGTTTATGCAAAGTGGACAACAGAGCGTTGTGCTGTATGTAGATG GGTTGAAGATTGGGACTACAACAAAATTATTATCTGTAACAGATGTCAGATAGCTGTTCATCAAGAATGCTATGGAGCAAGACATGTCCAGGATTTCACT TCATGGGTTTGCAAAGCATGTGAAATTCCAGAAATAAAGCGGGAGTGTTGCCTTTGTCCAGTCAAAGGTGGTGCTCTGAAGCCAACTGATGTCGAGACAC TGTGGGTCCATATAACATGTGCTTGGTTCAGACCTGAAGTTGCTTTTGCTAGTGATGAAAAGATGGAACCCGCTCTTGGGATTTTATGCATCCCTTCCAA TTCCTTTGTGAAGTTGCACTGCTTAGAAACAAAAGGAAAACAGACGACAAAAATGATTTCTTATTGTGCATATCACAGGGCTCCAAATCCAGATACCGTC TTGATTATACAGACTCCTGCAGGGGTATTTTCCGCCAAAAGTCTTCTTCAAAATAAGAAGAGGGCTGGTACACGGCTAATCTCATCTACTAGACTGAAAA TTGAAGAGTTGCCCACAGAAGAAACGACGAAAGTTGAACCACTATCAGCTGCAAGGTGCCGTGTCTATAATAGAGAAACTAACAACAGAAAGAGAACAAC AAATGAAGCTGTACCACACCGTCTGGCAAGGGTATGCCACCATCCTCGAGCCATGATCCAGAGTTTGAACACATCAAGGGTGGTGCAGGAGCCAGAAGTT TCCGTTTCTAACTTTTCCAACGGGTACGCGTATAATAGAAAACCGAAAACAATAGAGTTTGCTTTGGAAGATCAGGGATACATGGATGGGGTTCTTGAAT ATCGAGGTGAGCAGGTCAGGGGCAGTATTGCAGATCTTAGGGAGGCACGGTATCGTTTAGAAGGAAAAGACTGCTATTTATTTAAGATCAGCGAAGAGGT AGTTGTGGATGCAACTGATAAAGGAAACATTGCTCGCCTGATTAACCATTCCTGTATGCCCAATTGCTATGCAAGGATCATGAGTGTGGGTGACGATGAA AGCCGTATAGCCCTTATCGCAAAGACAAATGTAGCCTCTGGCGACGAGCTGACGTACGATTACTTGTTCGATCCTGATGAACCAGAAGAGTTCAAGTTAG GGCACTCCTTTAGTACATCTAACTACTACAGTACTACTACTGTTATTCCTCATTTGGTTCCTTCTTATATAGTTGAAAGAAAGCTAACTCGCCCTACCAT ACGTACCCCGCATTTTCTCCCCCAGCTACTGTTATCGGAAATATTTGGCGAGATCGTCAGTGCTCTAGCTCGTCGATTTGTTACCTTCTGCGGCGTTGAT TGGCCGTACTCTGCTAAGCTGTTGAGCGGAGAATCCCCAGAAGATAATTGTCCTTGTTTTATGAAGCTTCTGATTAGTGGAGAGACGATAAGGGAAATGA AGAACGAGAGAGATATTGAGTGA
AA sequence Show only first row Show all	>Lus10019026 pacid=23152717 polypeptide=Lus10019026 locus=Lus10019026.g ID=Lus10019026.BGIv1.0 annot-version=v1.0 MPSLKRCKLDDSACEPDDTTRNKKKKRKLNEGGGGYCPLNFLGQVANGIIPVGFRGILSSAALVGGGHIGFAAASWCTEVSYSPPEEDAELDSQFKVPEA SNPAEEVSRPPIVRTSRGRVQVLPSRFNDSVLENWRDEGRTRLQDDRFQEDDVNVVQCDATTSKKSKEKMKFSSKTQKIVSRNAKNQRSYERAAYFDSRG RAALFDEDDMLRVGFRSFDVKKNSTSRSTLSSLHHQIPVDNKCGIVDLYGSSERCKMNDGMFGPEDFYSGDIVWAKAGMNDPYWPAIVIDPMSQAPELVL RSCIPDAACLMFLGYSGDDQRDYAWVRRGMIFPFMDFVDRFQNQPLNAYKSSDFQMAIEEAFMVEQGFTEKLMQEINLIAGNTTCEEPVARWFQEASGSN QYHEMQSPNQASILGLLVMVMKKHYKWSCEGCGIGLSPKLLKNMKVAIPGGQLLCTTCARLTKSKHYCGICKKIWNHSESVSWVRCDGCKVWVHAECDKI SSNRFKDLSATDYYCPPCQAKFNFELSDSEIYQPNAKLNKSIGKQPLPNKVSVICSGVEGIYYPSFHMVVCKCGSCGPEKQALSEWERHTGSKIRNWRTS IRVKDSMLPLEQWMMQLAEFHARNVSTNPSKKPSIKDRKHKLLAFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARHVQDFT SWVCKACEIPEIKRECCLCPVKGGALKPTDVETLWVHITCAWFRPEVAFASDEKMEPALGILCIPSNSFVKLHCLETKGKQTTKMISYCAYHRAPNPDTV LIIQTPAGVFSAKSLLQNKKRAGTRLISSTRLKIEELPTEETTKVEPLSAARCRVYNRETNNRKRTTNEAVPHRLARVCHHPRAMIQSLNTSRVVQEPEV SVSNFSNGYAYNRKPKTIEFALEDQGYMDGVLEYRGEQVRGSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDE SRIALIAKTNVASGDELTYDYLFDPDEPEEFKLGHSFSTSNYYSTTTVIPHLVPSYIVERKLTRPTIRTPHFLPQLLLSEIFGEIVSALARRFVTFCGVD WPYSAKLLSGESPEDNCPCFMKLLISGETIREMKNERDIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10019026 [exp]	0	1
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Lus10017588 [exp]	1.4	0.9485
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10004570 [exp]	3.5	0.9413
AT4G38120			ARM repeat superfamily protein...		Lus10033266 [exp]	4.6	0.9395
AT3G24870			Helicase/SANT-associated, DNA ...		Lus10022788 [exp]	6.7	0.9440
AT1G74580			Pentatricopeptide repeat (PPR)...		Lus10000909 [exp]	6.7	0.9417
AT1G27590			unknown protein		Lus10028228 [exp]	7.2	0.9355
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10022224 [exp]	8.2	0.9453
AT4G03090			sequence-specific DNA binding;...		Lus10024745 [exp]	9.5	0.9366
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Lus10000967 [exp]	10.0	0.9210
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10019616 [exp]	10.2	0.9207

Compare expression of checked genes

Lus10019026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.