Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53400 286 / 2e-96 BOB1, BOBBER1 BOBBER1, HSP20-like chaperones superfamily protein (.1) AT4G27890 262 / 4e-87 HSP20-like chaperones superfamily protein (.1) AT5G58740 70 / 1e-14 HSP20-like chaperones superfamily protein (.1) AT2G27280 56 / 9e-09 Coiled-coil domain-containing protein 55 (DUF2040) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005009 [exp] 424 / 3e-150 AT5G53400 306 / 2e-103 BOBBER1, HSP20-like chaperones superfamily protein (.1) Lus10040656 [exp] 212 / 1e-68 AT5G53400 216 / 3e-70 BOBBER1, HSP20-like chaperones superfamily protein (.1) Lus10018250 [exp] 208 / 6e-67 AT5G53400 213 / 4e-69 BOBBER1, HSP20-like chaperones superfamily protein (.1) Lus10018234 [exp] 74 / 1e-15 AT5G58740 266 / 8e-93 HSP20-like chaperones superfamily protein (.1) Lus10040670 [exp] 72 / 3e-15 AT5G58740 216 / 2e-73 HSP20-like chaperones superfamily protein (.1) Lus10027048 [exp] 68 / 1e-14 AT4G27890 68 / 3e-15 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G014100 [exp] 351 / 5e-122 AT5G53400 277 / 4e-93 BOBBER1, HSP20-like chaperones superfamily protein (.1) Potri.015G013900 [exp] 324 / 4e-111 AT5G53400 283 / 8e-95 BOBBER1, HSP20-like chaperones superfamily protein (.1) Potri.003G100900 [exp] 236 / 5e-77 AT5G53400 232 / 2e-75 BOBBER1, HSP20-like chaperones superfamily protein (.1) Potri.001G132500 [exp] 231 / 8e-76 AT5G53400 225 / 1e-73 BOBBER1, HSP20-like chaperones superfamily protein (.1) Potri.001G251204 [exp] 76 / 1e-16 AT5G58740 298 / 1e-105 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF04969 [flax] [poplar] CS CS domain
Representative CDS sequence Show only first row Show all	>Lus10019028 pacid=23152689 polypeptide=Lus10019028 locus=Lus10019028.g ID=Lus10019028.BGIv1.0 annot-version=v1.0 ATGGCGTTGATCTCGGAGTACGAAGAGGAAGACAGCGGCCCCAAGACTGCTTCGTCATCGGCGACGGCTGCGTCTACACCTCCTGCGAAACAATCGACTT TCACCGCGCCTTTTGATCCGAGCAATCCGCTAGGGCTCGTGGAGAAACTGTTCGACTTCGTGGCTTCGGAGAGCGACTTCCTCTCCAAGGACTCGGCGGA GAAGGAGATCGCTGCAGTTTTCAAGGCTGCTAAAGAGAAGAGGAGTAAGAAGTTGAAAAGAGAGAAGGAAGCCGTTGAGAAAGAAGCTGCTGCCAAGGTC GAGGCTAAGAGGTTGAAGGAAGAAGCGAAGAAGCCAGCTGTCAAGGCGGAGGTCGAGAAGAAGGAAGAGAGTGGCGTTAGAGCTCCAAATAAAGGTAATG GACTTGATATGGAGCAATACTCCTGGACGCAGACCCTGCAGGAGGTCACAGTTCTCGTTCCAGTTCCTTCTGGGACTAAGTCGAAGTTTGTTGTGTGCGA CATTAAGAAAAACCATTTGAAAGTTGGACTTAAAGGTCAACCTCCGATTATCGAGGGTGAACTTCATAAGCCTATCAAGGTCGATGATTGTTATTGGAGC ATAGAGGATCAGAATACCATCTCAGTTCTATTGACGAAGCATGACCAAATGGCATGGTGGAAATGTTTGGTGAAAGGAGGTCCTGAAATTGATACACAGA AGGTTGAACCTGAAAACAGCAAGCTCTCTGACCTGGATCCCGAGACTCGCCAGACTGTTGAAAAGATGATGTTTGATCAGAGACAGAAGCAAATGGGGCT CCCGTCAAGTGATGAGATGCAGAAGCAGGATATTCTGAAGAAGTTCATGGCTGAGCATCCTGAGATGGACTTCTCAAGGGCGAAGATCAACTAA
AA sequence Show only first row Show all	>Lus10019028 pacid=23152689 polypeptide=Lus10019028 locus=Lus10019028.g ID=Lus10019028.BGIv1.0 annot-version=v1.0 MALISEYEEEDSGPKTASSSATAASTPPAKQSTFTAPFDPSNPLGLVEKLFDFVASESDFLSKDSAEKEIAAVFKAAKEKRSKKLKREKEAVEKEAAAKV EAKRLKEEAKKPAVKAEVEKKEESGVRAPNKGNGLDMEQYSWTQTLQEVTVLVPVPSGTKSKFVVCDIKKNHLKVGLKGQPPIIEGELHKPIKVDDCYWS IEDQNTISVLLTKHDQMAWWKCLVKGGPEIDTQKVEPENSKLSDLDPETRQTVEKMMFDQRQKQMGLPSSDEMQKQDILKKFMAEHPEMDFSRAKIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10019028 [exp]	0	1
AT4G39520			GTP-binding protein-related (....		Lus10006801 [exp]	1.0	0.9189
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Lus10024590 [exp]	2.0	0.8962
AT3G12050			Aha1 domain-containing protein...		Lus10021072 [exp]	5.7	0.9070
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032417 [exp]	8.2	0.7859
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10029455 [exp]	10.8	0.8992
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Lus10002943 [exp]	11.5	0.8621
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10005009 [exp]	12.6	0.8865
AT1G15230			unknown protein		Lus10035871 [exp]	12.6	0.8065
AT1G16810			unknown protein		Lus10026960 [exp]	13.0	0.8740
AT3G48690		ATCXE12	ARABIDOPSIS THALIANA CARBOXYES...		Lus10027909 [exp]	13.5	0.8734

Compare expression of checked genes

Lus10019028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.