Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13540 624 / 0 ENS, CBP80, ABH1, ATCBP80 ENSALADA, CAP-BINDING PROTEIN 80, ABA HYPERSENSITIVE 1, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005012 [exp] 892 / 0 AT2G13540 1240 / 0.0 ENSALADA, CAP-BINDING PROTEIN 80, ABA HYPERSENSITIVE 1, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G049200 [exp] 744 / 0 AT2G13540 1189 / 0.0 ENSALADA, CAP-BINDING PROTEIN 80, ABA HYPERSENSITIVE 1, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF09088 [flax] [poplar] MIF4G_like MIF4G like CL0020 [flax] [poplar] TPR PF09090 [flax] [poplar] MIF4G_like_2 MIF4G like
Representative CDS sequence Show only first row Show all	>Lus10019031 pacid=23152690 polypeptide=Lus10019031 locus=Lus10019031.g ID=Lus10019031.BGIv1.0 annot-version=v1.0 ATGGACCTCTGTAAGGCTCTTCCTGGAGCGTTTCCTGCCGTTGTAGCTGGAGCTGTCCGTGCTCTTTTTGAGAAGATCTCAGATTTAGATATGGAGTGCC GCAATAGACTTATCCTCTGGTTTTCTCACCATCTGTCAAACTTTCAATTCATCTGGCCATGGGAGGAATGGGCCTTTGTTCTTGACCTTCCTAAATGGGC CCCTCAGCGTGTCTTTGTGCAGGAGGTTTTGGAGAGGGAAGTTCGACTGTCATACTGGGACAAGGTTAAGCAGAGCGTTGAAAATGCACCTGCTTTAGAA GAGTTGCTTCCTCCCAAGGGGAGTCCGAACTTCAAGTACAGTGTTGAAGATGGGAGAGAAAAAACAGAATGTCATGCAATCTCAGCAGAGCTTAGTAGCA AGGTGAAGGGAAGGGCACTTGCTCGAGAAGTAATCTCGTGGGTTGAAGAAACGGTGTTAACCAGTCATGGTTGGGAAGTTACACTGTCAGTGATAGTACA GACTCTGCTTGATATTGGTTCTAAGAGTTTCACTCACTTGATTACTATTCTGGAGAGGTATGGCCAAGTCATTGCACGGCTCTGCCCAGACCTTGATAAG CAAGTCTTGTTGATAGCTGAATTGAGTTCGTACTGGGAGAACAACACCCAGATGTCAGCCATAGCAATAGATCGGATGATGGGCTACCGCCTGCTCTCTA ATTTGGCTATCATAAGATGGGTCTTTTCTCCAGCAAATGTAGAGCTATTTCATATTTCTGATCGTCCATGGGAGATGCTTAGGAATGCAATTAGCAAGAC TTACAATCGTATGTCAGATCTGAGAAAAGAGGTCGTGTCTCTGAAGAAGAATGTGCTAGTAGCTGAAGAAGCTGCAGCTAAGGCAAAAGCAGAGTTAGAT GCTTCCGAGTCCAACCTTACGTTGATGAATGGAGAGCCTGTTTTGGGTGATAATCCTGTGAAGATGAAGCGCTTGAAGTCGCATGCTGAAAAAGCCAAAG AAGAGGAGGAATCCATGCGTGATTCTTTGGAAGCTAAGGAGGCTCTGCTTACACGAGCTACCGTTGAAAATGAGGAATTGTTCCTTGCTTTGTATAAAAA CTTCTCGGATGTGCTGAGGGAGCGGTTGCCTAATGCATCTAAAGCTCAGACATTACAAGACTTGAAGTCAGCCCAAACAGATGAGATGGCTGTTGATGCT GATCAACCATCAACAATGGAAGTAGATGAGGAGAATGGGAGTACAAAGAAAAGTCGATCAAATGGTGAGAGTGGGAGCAGTGTCTACAGTATAGGTGAAA AGGAGCAGTGGTGCCTAACAACTCTTGGCTACATTAAGTCCCTCTCCAGGCAATATGCTTCCGAGGTGTGGTCACACATTGAGAAGTTGGATGCAGCGGT TCTGACTGAGGATGTCCACCCTCTTTTCCGGAGAGCAGTATATTCCGGTTTGCGGCGTCCAATAGACGAGGCTTCATCCGGATGA
AA sequence Show only first row Show all	>Lus10019031 pacid=23152690 polypeptide=Lus10019031 locus=Lus10019031.g ID=Lus10019031.BGIv1.0 annot-version=v1.0 MDLCKALPGAFPAVVAGAVRALFEKISDLDMECRNRLILWFSHHLSNFQFIWPWEEWAFVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSVENAPALE ELLPPKGSPNFKYSVEDGREKTECHAISAELSSKVKGRALAREVISWVEETVLTSHGWEVTLSVIVQTLLDIGSKSFTHLITILERYGQVIARLCPDLDK QVLLIAELSSYWENNTQMSAIAIDRMMGYRLLSNLAIIRWVFSPANVELFHISDRPWEMLRNAISKTYNRMSDLRKEVVSLKKNVLVAEEAAAKAKAELD ASESNLTLMNGEPVLGDNPVKMKRLKSHAEKAKEEEESMRDSLEAKEALLTRATVENEELFLALYKNFSDVLRERLPNASKAQTLQDLKSAQTDEMAVDA DQPSTMEVDEENGSTKKSRSNGESGSSVYSIGEKEQWCLTTLGYIKSLSRQYASEVWSHIEKLDAAVLTEDVHPLFRRAVYSGLRRPIDEASSG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10019031 [exp]	0	1
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Lus10009369 [exp]	4.2	0.8960
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10005012 [exp]	5.5	0.9156
AT1G06590			unknown protein		Lus10043409 [exp]	5.7	0.8777
AT3G18730		BRU1, MGO3, TSK	TONSOKU, MGOUN3, BRUSHY1, tetr...		Lus10037327 [exp]	5.8	0.9103
AT5G46070			Guanylate-binding family prote...		Lus10015327 [exp]	10.6	0.8997
AT1G77620			P-loop containing nucleoside t...		Lus10035108 [exp]	16.4	0.8750
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10027933 [exp]	16.7	0.9028
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10005385 [exp]	18.3	0.8950
AT2G41620			Nucleoporin interacting compon...		Lus10039624 [exp]	19.5	0.8990
AT2G26760		CYCB1;4, CYC3	Cyclin B1;4 (.1)		Lus10036080 [exp]	23.0	0.8941

Compare expression of checked genes

Lus10019031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.