Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13540 474 / 3e-162 ENS, CBP80, ABH1, ATCBP80 ENSALADA, CAP-BINDING PROTEIN 80, ABA HYPERSENSITIVE 1, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005012 [exp] 655 / 0 AT2G13540 1240 / 0.0 ENSALADA, CAP-BINDING PROTEIN 80, ABA HYPERSENSITIVE 1, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G049200 [exp] 551 / 0 AT2G13540 1189 / 0.0 ENSALADA, CAP-BINDING PROTEIN 80, ABA HYPERSENSITIVE 1, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02854 [flax] [poplar] MIF4G MIF4G domain
Representative CDS sequence Show only first row Show all	>Lus10019032 pacid=23152711 polypeptide=Lus10019032 locus=Lus10019032.g ID=Lus10019032.BGIv1.0 annot-version=v1.0 ATGAGTAGTTGGAGAAGCCTTCTTCTGCGAATCGGGGACAAGTGCCCCGAGTATGGCGGCAACGCTGACTTCAAAGACCACATTGAAACATGCTCGGGAG TTATTAGGCGAGAGCTAGAGCATTCCCCCGAAGACATTTCTAGTTTCCTTCTGCAATGTGCTGAGCAATTGCCGCACAAGGTTCCACTGTATGGCACTGT GATTGGTCTATTGAACCTTGAAAATGAGGATTTTGTAAAAGGTGTTGTTGAGACTACCCAGACTCGTTTTCAGGAGGGACTGGATTCTGGAAGCTGTGAC AGAATTCGTGTATTGCTCCGATTTCTGACTGCTCTGATGTGTAGTAAAGTTCTGCAACCTGCTTCCCTTGTGGTTGTCTTTGAAACATTACTGTCTTCTG CTGCCACCACATTGGATGAGGAGAAGGCAAATCCTTCGTGGCAAGCTCGTGGTGATTTCTTTGTAACTTGTATTTTATCGTGCCTTCCATGGGGTGGATC AGAATTAGCAGAGCAAGTTCCCGACGAAATTGAGAGAATTATGGTTGGGATGGAGGCGTATTTGAGCATAAGAAGGCATAATTCAGACATTGGCTTGTCT TTTTTTGAAGATGATGATTGCAGCGGAAGTGAGAAGGACTTCTTAGAGGATTTATGGGATAGGATAAAAGCTCTATCTACTAATGGATGGAAAGTCGATA GCGTTCCCAGACCTCATTTGGCATTTGAAGCTCAGCTGGTAAGTGGAAAGGCTCATGAGCTTGGGTGCATTAATGCTCCCGAGCAACCTGAGCCACTACC ACACCATACGGGGATAGCTTATGGCAGGGAAAAGCATATTGCAGAACTAAGGTATCCTCAACGGATACGGCGGCTAAATATATTCCCAACGGGTAAAAGT GAGGATATGCAACCTATAGATCGTTTCATTGTGGAAGAGTATCTATTGGATGTGCTTTTATTCCTCAATGGCTGGTTCGTCAATATCTGA
AA sequence Show only first row Show all	>Lus10019032 pacid=23152711 polypeptide=Lus10019032 locus=Lus10019032.g ID=Lus10019032.BGIv1.0 annot-version=v1.0 MSSWRSLLLRIGDKCPEYGGNADFKDHIETCSGVIRRELEHSPEDISSFLLQCAEQLPHKVPLYGTVIGLLNLENEDFVKGVVETTQTRFQEGLDSGSCD RIRVLLRFLTALMCSKVLQPASLVVVFETLLSSAATTLDEEKANPSWQARGDFFVTCILSCLPWGGSELAEQVPDEIERIMVGMEAYLSIRRHNSDIGLS FFEDDDCSGSEKDFLEDLWDRIKALSTNGWKVDSVPRPHLAFEAQLVSGKAHELGCINAPEQPEPLPHHTGIAYGREKHIAELRYPQRIRRLNIFPTGKS EDMQPIDRFIVEEYLLDVLLFLNGWFVNI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10019032 [exp]	0	1
AT3G55160			unknown protein		Lus10007253 [exp]	1.4	0.9760
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10016352 [exp]	2.8	0.9598
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10004531 [exp]	3.0	0.9622
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041554 [exp]	3.5	0.9681
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016333 [exp]	3.7	0.9537
AT2G06510		ATRPA70A, ATRPA...	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10033436 [exp]	4.9	0.9418
AT1G26170			ARM repeat superfamily protein...		Lus10031911 [exp]	6.3	0.9519
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10003700 [exp]	6.3	0.9589
AT2G17140			Pentatricopeptide repeat (PPR)...		Lus10026545 [exp]	6.7	0.9461
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022482 [exp]	7.3	0.9506

Compare expression of checked genes

Lus10019032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.