Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08520 1107 / 0 V157, ALB1, ALB-1V, PDE166, CHLD PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1) AT4G18480 207 / 2e-59 CHLI-1, CHL11, CH-42, CH42, CHLI1 CHLORINA 42, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G45930 206 / 6e-59 CHLI-2, CHLI2 magnesium chelatase i2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005013 [exp] 1294 / 0 AT1G08520 1146 / 0.0 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1) Lus10025423 [exp] 213 / 2e-61 AT5G45930 638 / 0.0 magnesium chelatase i2 (.1) Lus10015302 [exp] 210 / 2e-60 AT5G45930 632 / 0.0 magnesium chelatase i2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G049400 [exp] 631 / 0 AT1G08520 604 / 0.0 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1) Potri.011G063400 [exp] 217 / 6e-63 AT5G45930 605 / 0.0 magnesium chelatase i2 (.1) Potri.004G053400 [exp] 207 / 2e-59 AT5G45930 598 / 0.0 magnesium chelatase i2 (.1) Potri.001G254308 [exp] 174 / 7e-51 AT1G08520 160 / 1e-46 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1) Potri.001G254304 [exp] 144 / 7e-40 AT1G08520 120 / 3e-32 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [flax] [poplar] vWA-like PF00092 [flax] [poplar] VWA von Willebrand factor type A domain CL0023 [flax] [poplar] P-loop_NTPase PF01078 [flax] [poplar] Mg_chelatase Magnesium chelatase, subunit ChlI
Representative CDS sequence Show only first row Show all	>Lus10019033 pacid=23152713 polypeptide=Lus10019033 locus=Lus10019033.g ID=Lus10019033.BGIv1.0 annot-version=v1.0 ATGGCTGTCTCTCCTGCTCACTCTTCTCCCTTCTCCACACGCCATCTATTCCACCATCACGGTAATCATCTTCAACTCTGCAGCATCGTTCCCTCATCCA AGCTCCATTCTCTCCTTCTCCATCACCGCTCTGTCAAGCCTTCCTCAAACCGACGGTTTAAAGCTCGACGTTTGTCTATCACTGCTTCCTCCGCAACTCT CGACTCCGGCAATGGCACAGCGGTTTCGGCGAATAGTGACAAGGATTTGGATTCTGCTTCCTATGGAAGACAGTTCTTCCCTTTAGCTGCTGTTGTCGGC CAGGATGCTATTAAGACTGCGCTTTTGCTTGGCGCAATTGACCGTGAGATTGGGGGGATTGCAATTTGTGGGAAGCGAGGAACAGCCAAGACCATAATGG CTAGAGGCCTCCATGCAATTTTGCCACCCATTGATGTAGTTGTTGGTTCAATGTCAAATTCTGATCCAGCCTGCCCAGACGAATGGGAGGACGGGTTAGC CAAACGAGTGGAATATGGTGCAGATGGTAATGTGAAGACCCAGGTTGTGAGATCTCCATTTGTTCAGATTCCGCTTGGTGTCACAGAGGACCGACTCATT GGATCTGTTGATGTTGAGGAGTCTATTAAAACTGGAACGACTGTCTTTCAACCAGGCCTTCTAGCTGAAGCCCACAGAGGTGTCCTATATGTTGATGAGA TAAACCTTTTGGACGAGGGCATTAGTAACTTACTCCTCAATGTATTAACGGAAGGAGTTAATATAGTGGAAAGAGAGGGAATTAGTTTTAGGCATCCATG CAAGCCTCTCTTGATTGCTACTTATAACCCTGAAGAGGGAGCTGTACGTGAGCACTTGCTAGATCGTATTGCAATCAACTTGAGTGCAGATCTGCCAATG AACTTTGAAGATCGTGTTGCAGCTGTTGGAATTGCGACACAGTTTCAGGAACGCAGTAATGAAGTATTTAACCTGGTTGCAGAAGAAACTGAATCTGCTA AAACTCAGATCATTTTGGCTCGAGAATATCTGAAAGACGTTGTTGTTAGTCGGGACCAATTGAAGTACTTGGTTATGGAAGCCATTCGAGGTGGTTGCCA GCTCACATGTTCAATTCAGGGACATAGAGCTGAACTGTATGCTGCCCGAGTTGCAAAATGCCTGACTGCCCTGGAAGGCCGTGAAAAAGTCACAGTGGAT GACCTCAAAAAAGCTGTGGAACTGGTCATTCTTCCCAGGTCAATTATTAGTGATACCCCGCCACCAGATCAACAAAATCAACCGCCTCCGCCTCCACCCC CTCCACAAAATCAGGAAGATGGCGATGAAGAGAAGGAGGAGGAAGAAGATGAAGATCAAGAGGAGGAAGACGAGAATGATGAAGAGAAAGAACAGCAGGA CCAAATACCTGAAGAGTTCATTTTTGATGCAGAGGGAGGTTTGGTGGATGAGAAACTTCTTATCTTTGCACAGCAAGCACAAAGACGTCGAGGCAAAGCT GGCAGAGCAAAGAATGTCATATTTTCTGAGGATAGAGGTCGATACATTAAACCGATGCTCCCAAAGGGACCTGTAAAGAGACTAGCTGTTGATGCAACTC TTAGAGCTGCTGCCCCATATCAGAAGTTGCGCAGAGAGAAGGACACACAAAAGACTAGGAAAGTCTTTGTCGAGAAAACTGACATGAGAGCCAAAAGAAT GGCCCGAAAAGCTGGAGCACTGGTGATTTTTGTGGTCGATGCTAGTGGCAGTATGGCATTAAACAGAATGCAGAATGCAAAAGGTGCTGCACTGAAGTTG CTGGCTGACAGCTACACTAGCAGGGATCAGGTTGCCATCATTCCTTTCAGAGGAGATTCAGCAGAAGTTCTTTTACCTCCTTCAAGATCGATTTCGATGG CAAGGAAACGTCTCGAAAGACTCCCTTGCGGTGGTGGCTCTCCCCTAGCCCATGGTCTTACAACTGCTGTCAGAGTTGGGCTAAATGCAGAGAAGAGTGG TGACGTGGGACGAATAATGATAGTTGCAATAACTGATGGCAGAGCCAACATATCACTGAAACGATCAACGGACCCTGAATCGATCACTCCTGATACTCCA AGACCTTCATCTCAGGAACTGAAGGACGAGATTCTGGAAGTAGCAGCAAAAGTATATAAAGCAGGGATGTCTTTGCTGGTCATCGACACGGAGAACAAGT TCGTATCAACCGGGTTTGCCAAGGAGATAGCAAGAATTGCGCAAGGGAAATACTATTACTTGCCCAATGCAACGGACGCTGTGATTTCAGCAACAACCAG GGACGCTTTATCTGACTTGAAGAACTCTTGA
AA sequence Show only first row Show all	>Lus10019033 pacid=23152713 polypeptide=Lus10019033 locus=Lus10019033.g ID=Lus10019033.BGIv1.0 annot-version=v1.0 MAVSPAHSSPFSTRHLFHHHGNHLQLCSIVPSSKLHSLLLHHRSVKPSSNRRFKARRLSITASSATLDSGNGTAVSANSDKDLDSASYGRQFFPLAAVVG QDAIKTALLLGAIDREIGGIAICGKRGTAKTIMARGLHAILPPIDVVVGSMSNSDPACPDEWEDGLAKRVEYGADGNVKTQVVRSPFVQIPLGVTEDRLI GSVDVEESIKTGTTVFQPGLLAEAHRGVLYVDEINLLDEGISNLLLNVLTEGVNIVEREGISFRHPCKPLLIATYNPEEGAVREHLLDRIAINLSADLPM NFEDRVAAVGIATQFQERSNEVFNLVAEETESAKTQIILAREYLKDVVVSRDQLKYLVMEAIRGGCQLTCSIQGHRAELYAARVAKCLTALEGREKVTVD DLKKAVELVILPRSIISDTPPPDQQNQPPPPPPPPQNQEDGDEEKEEEEDEDQEEEDENDEEKEQQDQIPEEFIFDAEGGLVDEKLLIFAQQAQRRRGKA GRAKNVIFSEDRGRYIKPMLPKGPVKRLAVDATLRAAAPYQKLRREKDTQKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMALNRMQNAKGAALKL LADSYTSRDQVAIIPFRGDSAEVLLPPSRSISMARKRLERLPCGGGSPLAHGLTTAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPESITPDTP RPSSQELKDEILEVAAKVYKAGMSLLVIDTENKFVSTGFAKEIARIAQGKYYYLPNATDAVISATTRDALSDLKNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10019033 [exp]	0	1
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10005013 [exp]	1.0	0.9820
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10017912 [exp]	2.0	0.9668
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10005668 [exp]	2.4	0.9655
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10000862 [exp]	2.6	0.9580
AT1G14030			Rubisco methyltransferase fami...		Lus10036780 [exp]	3.0	0.9535
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10020325 [exp]	3.2	0.9612
AT4G11130		SMD1, RDR2	SILENCING MOVEMENT DEFICIENT 1...		Lus10002361 [exp]	3.6	0.9434
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10000483 [exp]	4.0	0.9652
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10014819 [exp]	5.5	0.9604
AT4G20130		PTAC14	plastid transcriptionally acti...		Lus10006942 [exp]	5.5	0.9485

Compare expression of checked genes

Lus10019033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.