Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 823 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 706 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G17230 575 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G56040 535 / 5e-173 Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G63930 528 / 3e-170 Leucine-rich repeat protein kinase family protein (.1) AT3G24240 520 / 8e-167 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT2G33170 512 / 7e-164 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 504 / 7e-161 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G17750 493 / 6e-157 AtPEPR2 PEP1 receptor 2 (.1) AT1G73080 471 / 2e-148 ATPEPR1, PEPR1 PEP1 receptor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019036 [exp] 1815 / 0 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10005017 [exp] 1058 / 0 AT4G08850 562 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 828 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 828 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 635 / 0 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10020936 [exp] 626 / 0 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 605 / 0 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10004046 [exp] 590 / 0 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10005015 [exp] 514 / 1e-175 AT4G08850 223 / 3e-66 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G123800 [exp] 719 / 0 AT4G08850 751 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123700 [exp] 690 / 0 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124200 [exp] 688 / 0 AT4G08850 743 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124300 [exp] 678 / 0 AT4G08850 727 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123400 [exp] 672 / 0 AT4G08850 708 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G122500 [exp] 664 / 0 AT1G35710 846 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G129100 [exp] 661 / 0 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G060400 [exp] 654 / 0 AT4G08850 728 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124100 [exp] 648 / 0 AT4G08850 711 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060084 [exp] 647 / 0 AT4G08850 724 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019035 pacid=23152687 polypeptide=Lus10019035 locus=Lus10019035.g ID=Lus10019035.BGIv1.0 annot-version=v1.0 ATGGCTTCCTTCCATTGTTCACTAGTAGCAATAATCTTCTTACTATATTCTTTAACCATCTCCTTTGCTAACAACCACCCACAAGAAGCAGAAGCTCTGC TCCAATGGAAAGCCTCCCTAACCAAAACTCCCCCTGCCATGAACTCCTCGTGGACTCACCTACGCTCTCCTTGCACCTGGTACGGACTCAGCTGCAACAA GGCCGGTCGAGTCCACCGGATGAACCTCAGTGTCTCGGGCATCCAAGGTAGCACCTTTCAACACTTCCCATTCCACACTCTCCCTAAAATTTCCTACATT GACCTCTACCAAAACGAGCTCTCGGGTCCCATCCCTCCTCAGCTCGCTAACCTTTCGAGCCACCTTGTTTACCTTGACCTGTCGGAGAATCAGTTCTCTG GCACCATCCCGCCTGAGATTGGTCTCCTTGAAAACCTTAACACCCTCCATCTTGCTGATAATCAACTGGTGGGTTCCATTCCCGAGGAGCTCGGTCAGTT GAGCCGTCTTCAGGATCTTGCACTGTATAATAATCTCCTGACCGGTACAATTCCTGCTTCTTTGGGGAAGCTGAGCAAGTTGGAATGGCTTTATATCTAT AACAACTCCCTTTCGGGCTCCCTTCCTCCTGAATTGGGTAACTTGTTGGAGTTGGTTGAGCTCTACACAGACCAGAATAGCCTTACAGGTTCTATTCCTT CGAGCTATGGCAAGTTACGTAAACTTAATCTGTTCTTTGCTTTCAAGAACAGACTCTCGGGTCAGATTCCAGATAGTCTTGGAAACTTAGTGTCGCTTGT GAATATAAGCCTTCACACGAATAATTTGTCCGGTGTGATTCCTTCGTCGTTGGGTAATCTCTCCAACCTCCTCATGCTTCATCTGTACGGAAATCAACTC AAGGGGTCCATTCCTCCTGAACTAGGCAACCTGAAAGAGCTAACGGATTTGGATTTGAGTTCGAATCAGCTCAATGGTCCGATTCCTTCGTCATTTTCCC GACTGAGCAACATGGAAGTGTTGTTCCTTGCTGATAACCAACTGTCAGGTTCAATCCCTCCAGGGATCGGAAACCTGCCGAAGCTAATTGAACTTCAAGT TTCCGGAAACCAGTTGAATGGTACAATTCCGTCGGACGTTTGCCTTGGTGGGTCTCTCCAAAGGCTTGGAGTAAACAACAATCAACTTTCAGGTCCGATC CCTGCAAGTCTGAGAGACTGCTCAAGCTTAGAAAGAGCTCTTTTTAATGGTAATCAACTCACAGGGAACATAACGACTATGTTCAGTGGCATCTATCCAA AGCTGAAACTGATCGGATTAAGCCACAATAACTTGTATGGCGAGATCTCTTCTGACTGGGGAGATCGCTTTCCACTGCTTGATATGTTGAGCATGGCGGG GAACAAAATTACCGGTTCGTTACCGCCTCACCTAGGAAACGCAACTCATCTTCAGGTCCTCAATCTTTCCTCCAACAGTTTGGTGGGAGAAATCCCAAGA GAGATATCAAATTTCGTTGCTCTGACAAGACTTGATCTCTCTTCGAATCAACTCTCTGGCTCTCTACCTCAAGATCTAGGAATGCTTGCTAAACTCGAGA TAATCGACATGTCCTCAAACATCCTAAGCAAGTCAATCCCCAGTGGGATAGGAAGCTTAGGGAAACTATTCTACTTGAATTTAAGCAACAACGAATTCGA AGGATCGATCCCAGCTAGCATGGGGAATCTGAAGCATCTATCGCAGCTTGACTTGAGCAACAACACATTAACAGGAGAGATCCCTGCCGAATTGTCCAAT CTTGAGGGCCTGGAGATCATGAACCTGTCGAGTAACCGGCTCACAGGACCTATCCCACACACTCTAAACCAACTTTTCGGATTGACACAGGCTGACTTTT CCCACAACGATCTAACTGGTGCGATCCCCGATTTCAAGGGAAACCTATCGTTTCTTGGGTTGCAAGGAAATGAAGGACTCTGTAGCTTGCACACTTCAGG TAATGGTGTTGTTTCCTCTTCCATCCCAACCTGCAAGCTACAAACCCATGGAGGTGGGCTGAAATCATGGATCAAGATTCTTATAATTACCGGAGCTTCC ACTGCATTTTTGCTCATCGTGATATGGAGCTGCTGGACAATCTCGAGGTGCAGGAAGAGAACCAATTGCGAGGAGGAATCACAAAAAGAAGGCAAGGACG ACGAATTTATGCTCTCTTCAGCAGAGACGGTCTTCGAGGAGATCATTAAAGCCACTGACGACTTCCACGACCTGATGGGGAAAGGCCGGTATGGCAGCGT TTTCAAGGCGAAGTTGCCCTCAGGGATAACAGTTGCAGTAAAGAAGTTCCATTCACCAGCAGAACCATGGGACCTGAAACAGTTTCCAAGTGACATCAAG GCATTGACGGAAATAAGGCATCAAAACATTGCCAGATTCTACGGCTACTGCACCCACCAGCGACACTCGTTTCTCCTGTACGAGTACCTCGAAATTGGGA GCTTGGCTTGCGTTCTGAGCAACGACCGAGAGGCTGGGACCGTGTTTGACTGGACAAAGAGGTACAACGTTATCAGAGGAGTAGCTGATGCATTGACATA CTTCCACCACGAATGCTCCCCGCCAATTATTCATCAAGACGTTAAGAGTAGCAACGTGCTTCTTGATGCGGAGTACGAAGCTCATGTCTCCGATTTTGGA ACTGCCAAGCTTCTCAAGCTTGATTCTTCCAATTGGACCGATGTTGCTGGAACCTACTGCAATATTGCGCCTGAACTGACTGACACGATGAAGGTGACGG AGATGAGCGATGTGTATAGCTTTGGGGTGATGGCTCTGGAAGCGATCCAAGGGAGTCATCCAAATGAGTTGGTAGCTAGAATCTGGATGCATCAACGCAA CAACATGGAAATGGACCTGAAGGAGATTCTGGATCCAAGATTACCAGCGCCTGCAACTCAAGTAGAGGAGGACAGATTGAGGCAAATCATTGATCTTGCT TTCTCGTGCCTATGCAATGATCCGACATTAAGACCAGATATGAGAATAGTTTCCCTGGTCTTGTCAAAGTTGGAAATAGTCGATTAA
AA sequence Show only first row Show all	>Lus10019035 pacid=23152687 polypeptide=Lus10019035 locus=Lus10019035.g ID=Lus10019035.BGIv1.0 annot-version=v1.0 MASFHCSLVAIIFLLYSLTISFANNHPQEAEALLQWKASLTKTPPAMNSSWTHLRSPCTWYGLSCNKAGRVHRMNLSVSGIQGSTFQHFPFHTLPKISYI DLYQNELSGPIPPQLANLSSHLVYLDLSENQFSGTIPPEIGLLENLNTLHLADNQLVGSIPEELGQLSRLQDLALYNNLLTGTIPASLGKLSKLEWLYIY NNSLSGSLPPELGNLLELVELYTDQNSLTGSIPSSYGKLRKLNLFFAFKNRLSGQIPDSLGNLVSLVNISLHTNNLSGVIPSSLGNLSNLLMLHLYGNQL KGSIPPELGNLKELTDLDLSSNQLNGPIPSSFSRLSNMEVLFLADNQLSGSIPPGIGNLPKLIELQVSGNQLNGTIPSDVCLGGSLQRLGVNNNQLSGPI PASLRDCSSLERALFNGNQLTGNITTMFSGIYPKLKLIGLSHNNLYGEISSDWGDRFPLLDMLSMAGNKITGSLPPHLGNATHLQVLNLSSNSLVGEIPR EISNFVALTRLDLSSNQLSGSLPQDLGMLAKLEIIDMSSNILSKSIPSGIGSLGKLFYLNLSNNEFEGSIPASMGNLKHLSQLDLSNNTLTGEIPAELSN LEGLEIMNLSSNRLTGPIPHTLNQLFGLTQADFSHNDLTGAIPDFKGNLSFLGLQGNEGLCSLHTSGNGVVSSSIPTCKLQTHGGGLKSWIKILIITGAS TAFLLIVIWSCWTISRCRKRTNCEEESQKEGKDDEFMLSSAETVFEEIIKATDDFHDLMGKGRYGSVFKAKLPSGITVAVKKFHSPAEPWDLKQFPSDIK ALTEIRHQNIARFYGYCTHQRHSFLLYEYLEIGSLACVLSNDREAGTVFDWTKRYNVIRGVADALTYFHHECSPPIIHQDVKSSNVLLDAEYEAHVSDFG TAKLLKLDSSNWTDVAGTYCNIAPELTDTMKVTEMSDVYSFGVMALEAIQGSHPNELVARIWMHQRNNMEMDLKEILDPRLPAPATQVEEDRLRQIIDLA FSCLCNDPTLRPDMRIVSLVLSKLEIVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019035 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019036 [exp]	1.0	0.9556
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Lus10039512 [exp]	2.4	0.9180
AT3G47570			Leucine-rich repeat protein ki...		Lus10011387 [exp]	3.5	0.9164
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10007633 [exp]	3.5	0.8801
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10026415 [exp]	4.0	0.9116
AT3G47570			Leucine-rich repeat protein ki...		Lus10032306 [exp]	6.3	0.9063
AT3G47570			Leucine-rich repeat protein ki...		Lus10011388 [exp]	7.3	0.8596
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031230 [exp]	7.5	0.8626
AT3G47570			Leucine-rich repeat protein ki...		Lus10011386 [exp]	8.1	0.8404
AT2G23200			Protein kinase superfamily pro...		Lus10012101 [exp]	8.5	0.8371

Compare expression of checked genes

Lus10019035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.