Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12410 277 / 1e-90 THUMP domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005018 [exp] 597 / 0 AT5G12410 415 / 9e-145 THUMP domain-containing protein (.1) Lus10023158 [exp] 44 / 0.0002 AT1G09290 325 / 4e-109 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G254600 [exp] 402 / 1e-139 AT5G12410 416 / 4e-145 THUMP domain-containing protein (.1) Potri.009G049700 [exp] 397 / 2e-137 AT5G12410 420 / 1e-146 THUMP domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02926 [flax] [poplar] THUMP THUMP domain
Representative CDS sequence Show only first row Show all	>Lus10019037 pacid=23152704 polypeptide=Lus10019037 locus=Lus10019037.g ID=Lus10019037.BGIv1.0 annot-version=v1.0 ATGGCGACGGATAACGCAGCAAGCAAGGGCACCAAGAAGCGGAAGCAATACCTTCCTTATAACAAACCGGTTAAGAAGAAGGGCTCATACCCACTCCATC CAGGAGTTCAAGGTTTCTTCATCACTTGTGATGGCGGCAGAGAGCGCCAAGCTTGTTTTGAAGCCATCAACGTTATCGACACTTTCTATGATGAGCTAGT CAATGGGACTGGTGGAAATGCGAAGATCTCCGAGCTGTCAAGTAAACCGGCAAACAAAAAGATCAAGTTCGCATACTCTGATGATGAAGAGGAGGAAGGT GATGATGATAAAAATGAGGTGGGGGAGAAGGAGAATGGAAAAGGGGAAATGGTGAAAGTAGAAGATAAATCTGAAGGCAATGATGCCAAATGCGAGACTC AGTCGAATGGAGAAACTAGTGTTCCAGCTGTGGGTACTACTAAGAGTAACAAAGATGAAACGGAAGAGAAGACCAACAATGAGGAAGAAGCCAGCAACGA AGCTCCAGAGCCTCCAGTGAAAAAGCAGTGCGTTGAAACAAAGGTTTCGGAAGGTGCTAGCACTGAGAAAGTGCCAGAGAAATCTATTGACAAGCTGATA GAGGAAGAGCTCAAAGAACTCGGAGACAAAAGCAAGAGACTTCTAGTCAATCTAGATTCAGGCTGCAATGGTGTTGTTTTCGTTCAAATGCGCAAGAGAG ATGGAGACCCTTCTCCCAAGGACGTTGCGGAACGCTTGATGACGAGCGCTGCATCTACGAGGAAACACATGTCAAGGTTTCTCTTGAGACTTTTGCCAAT CGAGGTATCCTGCTATCCATCGGAAGAAGAGATTTCAAGAGCAGTTGCACCGATCTTCGCAAAGTATTTCCCCGCAGATGCTTCCGAGCCACAGAAGTTT GCAGTGATGTACGGAGCCAGGGCGAATAGTGGACTCGACAGAGCAAAGGTTATAAACGCAGTGGCGAAATCAGTGCCTGCACCTCACAAAGTTGATCTCA GCAACCCAGACAAGACAATCGTCGTCGAAGTCGTCAAGACAGTTTGCTTGATTGGGGTTGTTGAGAAGTACAAGGAACTGGCAAAGTATAACCTCAGGCA GCTCACTTCTCCTCCTCCAACAACCGTGGAGACTAAAGCAGAGGCCAATTAG
AA sequence Show only first row Show all	>Lus10019037 pacid=23152704 polypeptide=Lus10019037 locus=Lus10019037.g ID=Lus10019037.BGIv1.0 annot-version=v1.0 MATDNAASKGTKKRKQYLPYNKPVKKKGSYPLHPGVQGFFITCDGGRERQACFEAINVIDTFYDELVNGTGGNAKISELSSKPANKKIKFAYSDDEEEEG DDDKNEVGEKENGKGEMVKVEDKSEGNDAKCETQSNGETSVPAVGTTKSNKDETEEKTNNEEEASNEAPEPPVKKQCVETKVSEGASTEKVPEKSIDKLI EEELKELGDKSKRLLVNLDSGCNGVVFVQMRKRDGDPSPKDVAERLMTSAASTRKHMSRFLLRLLPIEVSCYPSEEEISRAVAPIFAKYFPADASEPQKF AVMYGARANSGLDRAKVINAVAKSVPAPHKVDLSNPDKTIVVEVVKTVCLIGVVEKYKELAKYNLRQLTSPPPTTVETKAEAN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12410			THUMP domain-containing protei...		Lus10019037 [exp]	0	1
AT3G62330			Zinc knuckle (CCHC-type) famil...		Lus10010000 [exp]	2.4	0.8946
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10027681 [exp]	2.6	0.9073
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10043279 [exp]	3.2	0.8970
AT3G47120	C3HZnF		RNA recognition motif (RRM)-co...		Lus10018227 [exp]	3.3	0.8546
AT3G52040			unknown protein		Lus10039586 [exp]	5.5	0.8751
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10002027 [exp]	7.7	0.8891
AT3G23390			Zinc-binding ribosomal protein...		Lus10040983 [exp]	9.2	0.8694
AT5G08420			RNA-binding KH domain-containi...		Lus10042479 [exp]	10.0	0.8277
AT3G23390			Zinc-binding ribosomal protein...		Lus10013436 [exp]	10.2	0.8628
AT1G77750			Ribosomal protein S13/S18 fami...		Lus10037359 [exp]	10.4	0.8175

Compare expression of checked genes

Lus10019037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.