Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50460 566 / 0 ATHKL1, HKL1 hexokinase-like 1 (.1) AT3G20040 536 / 0 HKL2, ATHXK4 HEXOKINASE-LIKE 2, Hexokinase (.1) AT2G19860 457 / 1e-157 ATHXK2 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) AT4G29130 447 / 1e-153 GIN2, ATHXK1 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) AT1G47840 377 / 2e-126 HXK3 hexokinase 3 (.1) AT4G37840 261 / 4e-81 HKL3 hexokinase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005019 [exp] 785 / 0 AT1G50460 670 / 0.0 hexokinase-like 1 (.1) Lus10037588 [exp] 458 / 9e-158 AT4G29130 709 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10038287 [exp] 457 / 3e-157 AT4G29130 734 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10006843 [exp] 441 / 3e-151 AT4G29130 710 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10012946 [exp] 431 / 5e-147 AT2G19860 701 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10024336 [exp] 413 / 6e-140 AT1G47840 646 / 0.0 hexokinase 3 (.1) Lus10025815 [exp] 412 / 3e-138 AT2G19860 582 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10002041 [exp] 404 / 1e-136 AT1G47840 643 / 0.0 hexokinase 3 (.1) Lus10011584 [exp] 221 / 4e-66 AT4G37840 374 / 1e-125 hexokinase-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G254800 [exp] 672 / 0 AT1G50460 620 / 0.0 hexokinase-like 1 (.1) Potri.009G050000 [exp] 652 / 0 AT1G50460 576 / 0.0 hexokinase-like 1 (.1) Potri.018G088300 [exp] 473 / 1e-163 AT4G29130 743 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.001G190400 [exp] 456 / 3e-157 AT4G29130 649 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.005G238600 [exp] 410 / 5e-139 AT1G47840 644 / 0.0 hexokinase 3 (.1) Potri.007G009300 [exp] 318 / 2e-103 AT4G37840 520 / 0.0 hexokinase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF03727 [flax] [poplar] Hexokinase_2 Hexokinase CL0108 [flax] [poplar] Actin_ATPase PF00349 [flax] [poplar] Hexokinase_1 Hexokinase
Representative CDS sequence Show only first row Show all	>Lus10019038 pacid=23152685 polypeptide=Lus10019038 locus=Lus10019038.g ID=Lus10019038.BGIv1.0 annot-version=v1.0 ATGTGCGGTGGCGGGAGTGGTGGTGGGGAGGCGGCTGAAGAGTCGGAGGAAGTGGAGGAGGGTGATTGGAGTGTTGAGGGAGTTGGAAGAGTTCGAGTTT TGAGGGAGTTGGAAGAGTCTTGTGAGACTCCAGTCGGGAGGCTGAAGCAGGTGGTTGATGCTATGGCTGTGGAAATGCATGCTGGATTGGCATCTGAAGG AGGGTCCAAGCTCAAAATGTTGCTTACTTTTGTTGACCGTTTGCCGACTGGGAGTGAGATAGGAACTTATTATGCTCTAGATCTTGGCGGTACTAATTTT AGGGTGTTGCGGGTTCAGCTAGGAGGTACACGGTCTTCAATCTTGTCGAAAGATATTAAAAGGCAACCCATCCCTCAGCACTTGATGACCGGCACAAGTG AGGCCCTCTTTGACTTCATTACATCAACACTGAAACATTTTGTTGAACAAGATGAAACTGTGACTGAGCTCGCTCCGTCTTCACCAAGGGAGCTAGGGTT TACATTCTCTTTTCCAGTTAAACAGACTTCTATACGTTCTGGCGTCCTTATTCGATGGAACAAAGGGTTTTCCATTCAAGATATGGTTGGATGCGAAATT ATTGGACGTCTACAAGAAGCACTCACGAAGGAAGGTTTAGATATGTGTGCTACAGTGTTGGTGAATGATACTGTCGGAATATTATCCCTTGGACACTATC ATGACGCTGATACTGTAGCTGCTGTTAAAATTGGAACTGGTACTAATGCCTGCTATATGGAGCGGGCCGACGCGATCATTAAATGTCAAGGACTCCTTAC ATCTTCCGGAGGCATGGTGGTCAACATGGAATGGGGAAATTTCTGGTCATCTCATTTGCCAAGAACAATTTACGATGCTGATCTGGATTTGGAAAGTCCT AATCCAAACGACCAGGGTTTTGAGAAGATGATATCTGGAATGTATCTCGGTGACATTGTCAGGAGAGTACTACTCAGAATTTCGGAGGAGTCGGATATCC TCGGACCTGTCACGTCCAAATTATCGACTCCGTTTGTGCTCGAAATGCCATCAATGGCGGCCATGCACGAGGACGAAACTCCCGAGTTGAAGGTAGTGGA TGCCATCTTAAGAGACAAGCTGGAGATCCAAGAGGTTTCTCTAAAAGTGAGAAAGCTCGTCGTAAGACTATGTGACATAGTCACTCGAAGAGCCGCTCGG TTAGCAGCTGCCGGAATAGTGGGCATACTAAAGAAAATCGGACGAGATGGGACGGGAGGAATCACGGGAGGAAGAAGTAGCAGAAGCGACGCGAAGATGA AAAGAACGGTGGTAGCGGTGGAAGGGAGCTTGTACGTGAGCTACATGATGTTCAGAGAGTATTTGCATGAAGCCTTGAACGAGATATTGGGCGATGAAGT AGCGCAGCATGTGGTTCTTAGGGCGACAGAAGACGGCTCTTGTGCCGGGGCAGCTCTCCTCGCGGCCTTGCATTCTTCTTCTTCATCGTCGTCGGAGGAG ATTCAGCGGTAG
AA sequence Show only first row Show all	>Lus10019038 pacid=23152685 polypeptide=Lus10019038 locus=Lus10019038.g ID=Lus10019038.BGIv1.0 annot-version=v1.0 MCGGGSGGGEAAEESEEVEEGDWSVEGVGRVRVLRELEESCETPVGRLKQVVDAMAVEMHAGLASEGGSKLKMLLTFVDRLPTGSEIGTYYALDLGGTNF RVLRVQLGGTRSSILSKDIKRQPIPQHLMTGTSEALFDFITSTLKHFVEQDETVTELAPSSPRELGFTFSFPVKQTSIRSGVLIRWNKGFSIQDMVGCEI IGRLQEALTKEGLDMCATVLVNDTVGILSLGHYHDADTVAAVKIGTGTNACYMERADAIIKCQGLLTSSGGMVVNMEWGNFWSSHLPRTIYDADLDLESP NPNDQGFEKMISGMYLGDIVRRVLLRISEESDILGPVTSKLSTPFVLEMPSMAAMHEDETPELKVVDAILRDKLEIQEVSLKVRKLVVRLCDIVTRRAAR LAAAGIVGILKKIGRDGTGGITGGRSSRSDAKMKRTVVAVEGSLYVSYMMFREYLHEALNEILGDEVAQHVVLRATEDGSCAGAALLAALHSSSSSSSEE IQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50460		ATHKL1, HKL1	hexokinase-like 1 (.1)		Lus10019038 [exp]	0	1
					Lus10035120 [exp]	10.8	0.7703
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10033355 [exp]	13.4	0.8164
AT5G55150			Protein of unknown function (D...		Lus10007081 [exp]	15.4	0.7274
AT2G36110			Polynucleotidyl transferase, r...		Lus10043049 [exp]	23.2	0.7530
AT3G05610			Plant invertase/pectin methyle...		Lus10006940 [exp]	29.4	0.7129
AT5G55590		QRT1	QUARTET 1, Pectin lyase-like s...		Lus10016605 [exp]	34.4	0.7495
AT5G14230			unknown protein		Lus10041588 [exp]	34.6	0.6859
AT3G19300			Protein kinase superfamily pro...		Lus10019844 [exp]	39.6	0.7499
AT1G10850			Leucine-rich repeat protein ki...		Lus10013073 [exp]	41.0	0.7329
AT5G66580			unknown protein		Lus10000739 [exp]	43.3	0.6994

Compare expression of checked genes

Lus10019038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.