Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03990 47 / 7e-07 unknown protein AT3G51940 43 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039572 [exp] 39 / 0.0007 AT3G51940 123 / 9e-32 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G262800 [exp] 45 / 2e-06 AT5G03990 87 / 1e-20 unknown protein Potri.016G042400 [exp] 45 / 3e-06 AT5G03990 138 / 9e-39 unknown protein Potri.006G045900 [exp] 44 / 5e-06 AT5G03990 137 / 1e-38 unknown protein Potri.001G021100 [exp] 41 / 0.0001 AT3G51940 143 / 2e-38 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019039 pacid=23152691 polypeptide=Lus10019039 locus=Lus10019039.g ID=Lus10019039.BGIv1.0 annot-version=v1.0 ATGGAATCCAACAAAAGAACGCCACGCTACCATTATCAGCGACGGAAAAAGCAGACATTTCCCGTTTGCAAAACCGGCGGCGACGTTCCTGCGTGGGAGA AGCGATTCTGCTTGGTGGTCGGGAGGATGAAGTGGAAGGATTTATTGCGGTGCAAGGAGTCCGTTGATTCCTTCCCGGGCTACTATCACAAGGTTGTTGA CTGGGACGACTCCGCCGGCCTAGATTACTTCCGCTTCGCCAAGGCCCGCTTCTTTGCGGCGGCAGTTGGCCGTGGGGGAAACTGCCGTTTTCCGCCTACC CCGCTACCGCGGCCGGACAGCCGCTACCGAGTCCGGACAGCCTACTTGACGACGTTGTCTGGGGGGATCCGAACGTCGACGAGGAAGAGCGTCGGCTAG
AA sequence Show only first row Show all	>Lus10019039 pacid=23152691 polypeptide=Lus10019039 locus=Lus10019039.g ID=Lus10019039.BGIv1.0 annot-version=v1.0 MESNKRTPRYHYQRRKKQTFPVCKTGGDVPAWEKRFCLVVGRMKWKDLLRCKESVDSFPGYYHKVVDWDDSAGLDYFRFAKARFFAAAVGRGGNCRFPPT PLPRPDSRYRVRTAYLTTLSGGIRTSTRKSVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03990			unknown protein		Lus10019039 [exp]	0	1
AT1G14550			Peroxidase superfamily protein...		Lus10009899 [exp]	16.6	0.7426
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10030188 [exp]	20.9	0.6911
					Lus10019466 [exp]	38.1	0.6368
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10004031 [exp]	55.7	0.5779
AT2G15220			Plant basic secretory protein ...		Lus10019805 [exp]	56.2	0.5718
AT5G58890	MADS	AGL82	AGAMOUS-like 82 (.1)		Lus10020789 [exp]	60.2	0.5510
AT3G62710			Glycosyl hydrolase family prot...		Lus10034128 [exp]	93.3	0.5568
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10006697 [exp]	100.5	0.5673
					Lus10028949 [exp]	120.9	0.5574
AT1G69350			Tetratricopeptide repeat (TPR)...		Lus10009637 [exp]	142.0	0.5431

Compare expression of checked genes

Lus10019039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.