Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024904 [exp] 150 / 2e-42 AT1G57790 97 / 2e-21 F-box family protein (.1) Lus10013738 [exp] 135 / 4e-39 AT1G57790 73 / 3e-14 F-box family protein (.1) Lus10013731 [exp] 103 / 3e-27 AT1G17860 172 / 5e-53 Kunitz family trypsin and protease inhibitor protein (.1) Lus10029943 [exp] 58 / 4e-10 AT1G57790 81 / 4e-16 F-box family protein (.1) Lus10004476 [exp] 55 / 4e-09 AT1G57790 92 / 4e-20 F-box family protein (.1) Lus10035341 [exp] 52 / 2e-08 ND / Lus10022706 [exp] 40 / 0.0003 AT1G57790 293 / 3e-97 F-box family protein (.1) Lus10019204 [exp] 39 / 0.0007 AT1G57790 79 / 2e-16 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G106800 [exp] 81 / 4e-18 AT1G57790 99 / 6e-23 F-box family protein (.1) Potri.005G105400 [exp] 39 / 0.0008 AT1G65770 148 / 8e-41 ascorbic acid mannose pathway regulator 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019040 pacid=23152703 polypeptide=Lus10019040 locus=Lus10019040.g ID=Lus10019040.BGIv1.0 annot-version=v1.0 ATGGGGATATTCGATCCGAAGAAGAAGAGGAGCGAGAACATGTGGAGGATACTCGATGTAAAATCACATCGCGCTTTTTCCACGAGCTGTTATAATCAAT CTTACTTGATGGAATCTAGCCAATCCGGAGAGCGGATTTCAGTCCTGGTTGGATGGTACGGGGAATTCGTTAGGGTTTTCAAGTTCAACGGACACATGAG GCTATGGCAGAGTGTTTCTAGTCTCGGAGATCAAGTGGCTTGCTTGAGTGGCACGTCATCGATGATCCTGTCCTGCCGTGAGCTGCAAGTTAAGGGATTG GAGAACACCATCCATTTTGCAAGGTTTGACGACGTTGGTAACTACAACGTGTTCTACTCGCTTTCGACTGGGAAATTTCACTCTGTTAAGAATGGATACA CTTCGTACAACTTGTTAGATACCCAACTTTACTTGAACACTACTGGATTGATTTGGATAACCATGGACGATCATGAACTTGCGGTTGATAACTAA
AA sequence Show only first row Show all	>Lus10019040 pacid=23152703 polypeptide=Lus10019040 locus=Lus10019040.g ID=Lus10019040.BGIv1.0 annot-version=v1.0 MGIFDPKKKRSENMWRILDVKSHRAFSTSCYNQSYLMESSQSGERISVLVGWYGEFVRVFKFNGHMRLWQSVSSLGDQVACLSGTSSMILSCRELQVKGL ENTIHFARFDDVGNYNVFYSLSTGKFHSVKNGYTSYNLLDTQLYLNTTGLIWITMDDHELAVDN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019040 [exp]	0	1
					Lus10003753 [exp]	10.5	0.5774
AT4G20040			Pectin lyase-like superfamily ...		Lus10008700 [exp]	14.9	0.5774
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10041381 [exp]	15.5	0.5760
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000682 [exp]	18.2	0.5774
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10032339 [exp]	21.1	0.5774
AT3G14250			RING/U-box superfamily protein...		Lus10022064 [exp]	24.6	0.5329
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	30.9	0.5160
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	31.9	0.5160
					Lus10017767 [exp]	32.0	0.5602
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	33.0	0.5160

Compare expression of checked genes

Lus10019040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.