Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12430 701 / 0 TPR16 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT2G41520 518 / 1e-164 TPR15 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) AT1G02650 106 / 2e-23 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02100 100 / 1e-21 Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT3G58620 97 / 3e-20 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT2G42580 92 / 9e-19 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT5G65160 92 / 1e-18 TPR14 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) AT1G78120 91 / 2e-18 TPR12 tetratricopeptide repeat 12, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62570 89 / 8e-18 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G53300 80 / 5e-15 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005022 [exp] 2050 / 0 AT5G12430 791 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10035427 [exp] 550 / 9e-178 AT2G41520 635 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10031042 [exp] 424 / 6e-129 AT2G41520 505 / 4e-160 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10031041 [exp] 140 / 2e-38 AT2G41520 128 / 5e-35 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10002438 [exp] 106 / 2e-23 AT4G02100 648 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10028154 [exp] 91 / 2e-18 AT1G53300 754 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10042854 [exp] 88 / 3e-17 AT1G53300 749 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10010272 [exp] 81 / 3e-15 AT4G02100 702 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10022500 [exp] 81 / 4e-15 AT5G65160 652 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G050200 [exp] 967 / 0 AT5G12430 821 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.001G255000 [exp] 965 / 0 AT5G12430 738 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.006G047700 [exp] 634 / 0 AT2G41520 640 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Potri.016G043900 [exp] 613 / 0 AT2G41520 612 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Potri.002G094800 [exp] 91 / 2e-18 AT5G65160 451 / 2e-152 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.005G166300 [exp] 87 / 5e-17 AT5G65160 436 / 5e-145 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.011G111500 [exp] 86 / 8e-17 AT1G53300 707 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.014G122300 [exp] 86 / 9e-17 AT4G02100 637 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.007G091200 [exp] 85 / 1e-16 AT5G65160 570 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.005G076800 [exp] 83 / 5e-16 AT5G65160 619 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10019041 pacid=23152680 polypeptide=Lus10019041 locus=Lus10019041.g ID=Lus10019041.BGIv1.0 annot-version=v1.0 ATGAATTCATCCGGCTTCGGTAATTCGAATCCCGCTAGCTACGGGGAGAGCAACGTTAACATGAGCTTCAATTCCACCTCCGCTGGTCGTGGAACTGGTC ATCATCATAATAATAACAAGGGCGTTTCCAAGCCTAGATTGGTGAAGGTGAGAAGGCAATTGAGTGTCCAGAATCCCAAAACGGAATCCGGATGGCCGCC TGGTCCCGGTGCAAATCCCTCCCGACCACCGCCGCCGCCGCCACCTGAAGTTTCTTCGTCGGGGTTTGTGTTTGGGGCGTGTAGGAGTAATTCTCTAGGG AGAATGAACCTGGAGAAAGGAATTCTTGATGAAATGAAGAGTTTGAACATTGGGAGCGGTGGCAATGTGGAGTCCTCCTTACTGCCGGATGAGCTTAACA GGAAGCTCAACATTGGAGGAGAGGTTAGGGCTCCAGGTAAATTTGCATTCAATGTGGATTCTGCTAACGGGCTTCATGATCAGATGAGTAGTTTGAACAT TAAGGATTCTTCGGGTGTTCGTGTTACTAATCATATTAGGAAGGATGATTTTGGGAATGGGAGAAAGGAAAAATCTGTGCTTCAAGAAGAAAGTGAGAAC AAATTGTTGGATGACATGAGAAATAAGTTGAATATTGGAAGTGCAATGGGACAACAACCAGCTGGTTTAAAAGACTCATCAAAAGTTTCTTCTTCTAGAA TCTTTGGGCAAGATGTGGATACTGGAAATAAGAATCCTTTTAGGGGAGATCGTAGTCATGTTCCTTTAAGCCAACCAAAAGTTAATGCACAACAGGCTGG AGTTGCAGCCTCATCGTCCGAGTCATTTTCATTTGGTGGTGTTCCCTTGTCCGAGGGTGCGAATCCAAAAGATGGGGGAGTGCCTTTTGTAGAATTCAAG ACTCCTAATCCAAAAGTAGGTGCATTTACTGGTGTGAATCATAAGGTTGAGTTCAGTGCCAAGCCGAAAGACTCGAAACTTAAGAAGAGAAGGAGTAAGT TAAAGCATTCTACAGCGGTGCATCTATGTACTGGGCAGGATTACAACTCCAAGGGTGAAGCCTCTGAGGTTTCTGACTCCTATTCACCAATGGATATTTC TCCATATATGTTATCTGACACTCGACGTTCCAGGGAATCATCAGTTGCATCAGAGGAGTCCTTTAGCACCAGCAACCAGTTCGCATCAACCGAGTCAGAC CAGCAAGGAATTTCAAGGAATTACTCAATGGAAGACCTGGTTGGTGCAACTGAACGGATGGATATAAATACAGCCTCGACAGGGGAAGCATCTGATCACT GTTCTGGTAAAGATCATGATGCTGATGGTGATTCCCAAGATGATTCTGTTTCTGGATTTGAAGCTGAAAGCTTTAAATCTGCAAATGAAGAAATAGATTC CATCAACGGTGTTGTTTATTCAAGGGAACAGGAGGCTAGCTCCAGCAAGCACAGTGGGAGACAAGATTCTGAGACGAGGACTCAATTCTATTCTGCTAAT TGTTCAGAAGATTCAGGTGCTTCAGGTTTCACATTCGCTGCCTCTTCTACTGCACAGTCATCTTTGAAACCTCACCCTAAGAAGAAAAATCTTTCTTTGA ACACAAAGATCCCATTTGCATCCTCCTCATTTAAGTTGACTTCAGCCTCTGGAGCTTCATCGCTTTTGTCCCCGCTGATGTCCCCAGCCAATGATAGTAG AAGTTGTCTACCCAGCCCATCATTGCTTTTGTCCCCTTCTATGAACAGCAGAAGTGGTTTACCCAGCCCAATGCTTTATTCTCCTTCTATGAACAACATA GGTGGTTTACCCAGCACTTCGCCAACAGTTGGTGATAATTCAGAGATGCTTAGAGGGAAAGAAATCAAGCAAGATTCTAATATTCCATCTGCTGCATCAG TTGCGGCCCAAGAAGCTTGTGAAAAATGGCGGTTGAGAGGGAATCAAGCATATAAAACTGGGGAACTATTGAGAGCAGAAGATTGTTACACACAAGGATT GAATTGTATACCTAAAACTGAGAAGGCTAGATGCTGCCTTAGAGCTTTGATGCTCTGCTATAGTAATCGGGCAGCAACGAGGATGTCTATGGGGAGAATG AGAGATGCACTGGAAGACTGCAAGACATCTTCTGGGATTGATCCCAATTTCCTCAGAGTACAACTTAGAGCTGCAAGCTGTTACCTTGCCTTGGGTGAAG TTGAAAATGCATCAGATTTTTTCAAGAAGTGCTTGCAACTAGGAAGTGATGTATGTGTGGACAGGAAGATCGAAATAGAAGCCTCTGAGGGCCTACAAAA GATGGAGAAAGTGACGGAGTGCATACAACGATCTGCCGAACTCTTGGAAAGTGGAACACTGAATGATGCAGGCACAGCTGTGGAAGTTATTTCTGAGGCT TTACTCATAAGTCCATTTGCTGACAAGTTAGTTGAAATGAAAGCGAAGGGCCTTTTTGCGCTTCGCAGGTACGAAGATGTAATTCAGTTGTGTGAGCAGA CTTTTGATTCAGCGAAAAAGAACTCACCTGCAGTACCTGCTGATTATGATCCAATGCATGCTGATCCATCTGCACTTAAGTGGGAAACTTCCTTTAGGCT TTGGCGCTGCCGTCTATCTTTCATGTCATACTTCTATCTTGGAAAGCTGGAGGATGCCATTAATTCATTGGAGAAACACGCGGAACCGAATTCTGCTTCT GGCCGTCAATCGAAATGTGATAGCAGCTATCTGGAGAAATTAATACCATTGGCTTCTACGACTCGAGAATTGTTACACCATAAGGTTGCAGGAAATGAAG CATTTCAAAGAGGAAAACATTCTGAAGCTATTGAACACTATACTGCTGTGCTGTCACGCAATGTGGAGTCACTGCCTTTTGCAGCTATTTGCTTCTGCAA TCGAGCAGCTGCTTACAAGGAGTTGGGGCAAATTACTGATGCCATTGCTGACTGCAGCCTTGCAATAGCACTTGATGGCAATTATCTAAAGGCAATTTCT AGACGGGCCACTCTATATGAGATGATTAGAGATTATGGGCAGGCAGGTCATGATCTTGAGAGACTGGTATCTGCACTCGCAAGACAGGCAGAGGATAAAA ACAACCAGCTTGGACAAGCTGAGGGGTCGACGAACTTGCTAAATGATCTAAGACAAGCTCGTCTTCATCTTGCTAACATGGAAGAACAAGACAGAAAAGA TATTCCATTGAATGCATATCTCATCTTGGGTGTTGAGACTTCTGCATCAGCCGCAGAAATTAAAAAAGCGTATCGGAAAGCTGCTCTGAGGCATCATCCT GACAAGGCTGGTCAATCGTTGGCGAGGGGTGAAAATGGAGATGATGGGCTTTGGAAGGAGATAGGAGAAGAAGTTCATAAGCATGCAGACAGACTTTTTA AAATGATTGGAGAGGCTTATGCAGTCCTTTCAGATCCCGCACAGCGGTCGCAATATGATCTGGAAGAAGAAATGAGGAATGTCCAAAAGACACGCAGCGG AAACAGCACATATAGAGCATATACTGACACTCACAGCTCTCAGTTCGAAAGAGGCGGTGGCTCCAGGCGACACTGGAGAGAAGCTTGGAGAGCTTATGGC CGATAA
AA sequence Show only first row Show all	>Lus10019041 pacid=23152680 polypeptide=Lus10019041 locus=Lus10019041.g ID=Lus10019041.BGIv1.0 annot-version=v1.0 MNSSGFGNSNPASYGESNVNMSFNSTSAGRGTGHHHNNNKGVSKPRLVKVRRQLSVQNPKTESGWPPGPGANPSRPPPPPPPEVSSSGFVFGACRSNSLG RMNLEKGILDEMKSLNIGSGGNVESSLLPDELNRKLNIGGEVRAPGKFAFNVDSANGLHDQMSSLNIKDSSGVRVTNHIRKDDFGNGRKEKSVLQEESEN KLLDDMRNKLNIGSAMGQQPAGLKDSSKVSSSRIFGQDVDTGNKNPFRGDRSHVPLSQPKVNAQQAGVAASSSESFSFGGVPLSEGANPKDGGVPFVEFK TPNPKVGAFTGVNHKVEFSAKPKDSKLKKRRSKLKHSTAVHLCTGQDYNSKGEASEVSDSYSPMDISPYMLSDTRRSRESSVASEESFSTSNQFASTESD QQGISRNYSMEDLVGATERMDINTASTGEASDHCSGKDHDADGDSQDDSVSGFEAESFKSANEEIDSINGVVYSREQEASSSKHSGRQDSETRTQFYSAN CSEDSGASGFTFAASSTAQSSLKPHPKKKNLSLNTKIPFASSSFKLTSASGASSLLSPLMSPANDSRSCLPSPSLLLSPSMNSRSGLPSPMLYSPSMNNI GGLPSTSPTVGDNSEMLRGKEIKQDSNIPSAASVAAQEACEKWRLRGNQAYKTGELLRAEDCYTQGLNCIPKTEKARCCLRALMLCYSNRAATRMSMGRM RDALEDCKTSSGIDPNFLRVQLRAASCYLALGEVENASDFFKKCLQLGSDVCVDRKIEIEASEGLQKMEKVTECIQRSAELLESGTLNDAGTAVEVISEA LLISPFADKLVEMKAKGLFALRRYEDVIQLCEQTFDSAKKNSPAVPADYDPMHADPSALKWETSFRLWRCRLSFMSYFYLGKLEDAINSLEKHAEPNSAS GRQSKCDSSYLEKLIPLASTTRELLHHKVAGNEAFQRGKHSEAIEHYTAVLSRNVESLPFAAICFCNRAAAYKELGQITDAIADCSLAIALDGNYLKAIS RRATLYEMIRDYGQAGHDLERLVSALARQAEDKNNQLGQAEGSTNLLNDLRQARLHLANMEEQDRKDIPLNAYLILGVETSASAAEIKKAYRKAALRHHP DKAGQSLARGENGDDGLWKEIGEEVHKHADRLFKMIGEAYAVLSDPAQRSQYDLEEEMRNVQKTRSGNSTYRAYTDTHSSQFERGGGSRRHWREAWRAYG R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Lus10019041 [exp]	0	1
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Lus10005022 [exp]	1.0	0.9697
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Lus10034840 [exp]	8.1	0.7500
AT3G20720			unknown protein		Lus10011166 [exp]	8.5	0.8046
AT5G52530			dentin sialophosphoprotein-rel...		Lus10014955 [exp]	12.6	0.7762
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10023353 [exp]	14.9	0.7871
AT5G19610		GNL2	GNOM-like 2 (.1)		Lus10021771 [exp]	21.7	0.6823
AT2G46520			cellular apoptosis susceptibil...		Lus10030423 [exp]	22.3	0.6851
AT2G40860			protein kinase family protein ...		Lus10024475 [exp]	22.8	0.7044
AT5G50180			Protein kinase superfamily pro...		Lus10035233 [exp]	24.2	0.7146
AT5G52530			dentin sialophosphoprotein-rel...		Lus10038838 [exp]	31.6	0.7463

Compare expression of checked genes

Lus10019041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.