Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21100 275 / 3e-84 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G12440 256 / 2e-76 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) AT1G51520 203 / 3e-59 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G51950 196 / 3e-55 C3HZnF Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) AT3G63450 179 / 3e-50 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT2G05160 138 / 1e-34 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) AT1G51530 82 / 2e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G14300 45 / 0.0001 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G17640 42 / 0.0009 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G52980 0 / 1 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005023 [exp] 806 / 0 AT3G21100 380 / 4e-125 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10014915 [exp] 521 / 4e-180 AT3G21100 384 / 7e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10027350 [exp] 463 / 8e-158 AT3G21100 327 / 4e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10019044 [exp] 248 / 6e-74 AT3G51950 341 / 4e-110 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10005319 [exp] 239 / 9e-71 AT3G51950 420 / 2e-141 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10039575 [exp] 238 / 2e-70 AT3G51950 427 / 3e-144 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10027351 [exp] 210 / 3e-63 AT3G21100 235 / 6e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10009964 [exp] 174 / 1e-48 AT3G51950 215 / 3e-64 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10012333 [exp] 151 / 3e-39 AT2G05160 488 / 2e-168 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G050600 [exp] 476 / 3e-161 AT3G21100 360 / 4e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G255400 [exp] 436 / 2e-145 AT3G21100 338 / 2e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G255532 [exp] 271 / 4e-82 AT3G51950 347 / 8e-112 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.009G050700 [exp] 259 / 3e-77 AT3G51950 362 / 4e-117 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.003G204300 [exp] 255 / 8e-76 AT3G51950 342 / 1e-109 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G020300 [exp] 237 / 7e-69 AT3G51950 330 / 1e-104 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.014G165500 [exp] 153 / 1e-39 AT2G05160 513 / 8e-178 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.002G221100 [exp] 147 / 1e-37 AT2G05160 469 / 1e-160 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.001G276300 [exp] 83 / 7e-18 AT5G12440 80 / 3e-17 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10019042 pacid=23152702 polypeptide=Lus10019042 locus=Lus10019042.g ID=Lus10019042.BGIv1.0 annot-version=v1.0 ATGGATCCTTGCGAGACAACAAACTTGCTCCTCTCCAGGATCAAGAGCATAGACCCGGACAACGCCTCCAAAATCCTGGGATTCATCCTCATTCACGACC TCGGCGACCGGGAGTTGGCCAGTCTCGCCGTCGGCCACGAAACCCACTTGCTAAACTTCATTTCCAAGGCCAGAACCCACCTCAACCTTTCGTTGAACAC CTCGTCTGCAACTTCCGCCGTCCAACTACTCTCTTCTTCCCCTTCTTCCCCTCTCAATCCCATCTCTAGGCCTGTCGTTGGGAACTGTGCTGGAAACCCT TTCTCCTCCCACCACCACTCTTCCCCTAAGTTTGCTTCACCGTTCGTTGGTTTCTCTAGGAACAACCCTTCTTCTCCCCATTCTTGGCCGGTCTCTGCTA ATAATAGCATTAGTAGTAGTGGTAGCAACAATTGCAGCATTTCTCTGAGTCCCAAATCGAGCCCCTTTCTGTCTTACGACAGCATACGCGCTGCTGGTCC CGTCAAGTCTCCCGCTTTCTCCAAGTCTAGCGGCAATGCCGATTCTTCAAGCAACGATGCCCTTGAAGATTACCCCTTCGACGAGTATCTCTCTTTTCTC GACGATTCCTCTTCCAGGAACGACGACTTTGTTGACCCTGCTGCGGATTCACAGCTGCATAGGAGGAGGTTTTCGGAGAGCGATGCATGCCCCGATGATG AAGATGATGCTTTGGGAATTGGGTATAATAGACCATGTTTGAATAATCGTGTTATGGTTGGCTCACCTAGGGAAATGGAGAGTCTTTACTTGCAACAGCA TGAAGGGATGATGAGGCTGAAGGCTGCTCAGCAACAGCAACAGAGACTAGTTTACAGCAAGTATATGAACTTCTTGTTGCACCAACATAACGATCAACAT AGATTGGGTGCTGCAGCAGCAATGAACCGTGAGGAGTTTCACAAGTTTGGCCGCTTTTGTACTGAAAGAAATGACTTTTTTGCAATGGCAATGGCGGAGA AGGCAAATTCAGCTTCCCGTCAGATATATTTGACATTCCCTGCAGAAAGCACGTTCAGAGATGAGGATGTTTCAAATTATTTCAGCACTTTTGGTCCAGT TGAAGATGTTAGGATCCCATATCAACAAAAGCGGATGTTTGGATTTGTAACATTTGTTCACCCAGATACTGTGAAGCAGATATTGGCCAGGGGAAATCCT CATTTTATCTGTGATTCACGCGTGCTTGTCAAGCCTTACAAGGAAAAGGGAAAAGCTTCAAATGAGAGGCAACATCATATGCATCAGCAGTTAGTTGAGA GAGGAGGAAGCTTGTCCTCATGTTCAAGTCCTTCTGGGCTTGATGGTAGAGAGCTGTATGATCTTCCGATGGGTCCAAGGATAGGTTATAATTCACCGGA AATGATGCTGAGGAGAAAGTTAGATGAACATGCTGAGCTGCAGCAAGCTATTGAACTCCAAGGGAGAAGGTTAGTAAATCTACAGCTTCCAGATCTGCGA GGTGATTATGTACAGCATCAGCGTAGCCTTTCTGTTGGTGCACCCATTTCGATGCCTTCTCCTCTCAGCCAAAGAACATGCTGGAGCCATGAAGTCTTAG AAGTAATGGGAACAATGCTGAACATGAACTTAAAGATAACCTTGTTAGTTCTCGTCCAAAGTCACCCGGGAAGCAAAATTGCAACTGTTCTCCCCTTGAT TCATCATTGGAAAATACTTCAGACGTGTCGAGTACTTCTCCCCATGATGCAACTTCCCGTTAGCTCGGCCAAGGTGTTGTTTAACTCTGCTCAAACAATG TGTCTTCAGCGTTTTCCTCTTCTGTAA
AA sequence Show only first row Show all	>Lus10019042 pacid=23152702 polypeptide=Lus10019042 locus=Lus10019042.g ID=Lus10019042.BGIv1.0 annot-version=v1.0 MDPCETTNLLLSRIKSIDPDNASKILGFILIHDLGDRELASLAVGHETHLLNFISKARTHLNLSLNTSSATSAVQLLSSSPSSPLNPISRPVVGNCAGNP FSSHHHSSPKFASPFVGFSRNNPSSPHSWPVSANNSISSSGSNNCSISLSPKSSPFLSYDSIRAAGPVKSPAFSKSSGNADSSSNDALEDYPFDEYLSFL DDSSSRNDDFVDPAADSQLHRRRFSESDACPDDEDDALGIGYNRPCLNNRVMVGSPREMESLYLQQHEGMMRLKAAQQQQQRLVYSKYMNFLLHQHNDQH RLGAAAAMNREEFHKFGRFCTERNDFFAMAMAEKANSASRQIYLTFPAESTFRDEDVSNYFSTFGPVEDVRIPYQQKRMFGFVTFVHPDTVKQILARGNP HFICDSRVLVKPYKEKGKASNERQHHMHQQLVERGGSLSSCSSPSGLDGRELYDLPMGPRIGYNSPEMMLRRKLDEHAELQQAIELQGRRLVNLQLPDLR GDYVQHQRSLSVGAPISMPSPLSQRTCWSHEVLEVMGTMLNMNLKITLLVLVQSHPGSKIATVLPLIHHWKILQTCRVLLPMMQLPVSSAKVLFNSAQTM CLQRFPLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10019042 [exp]	0	1
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10005023 [exp]	1.7	0.9625
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10027350 [exp]	4.2	0.9425
AT3G10310			P-loop nucleoside triphosphate...		Lus10031058 [exp]	4.9	0.9120
AT2G04235			unknown protein		Lus10016054 [exp]	6.8	0.9538
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Lus10038071 [exp]	6.9	0.9396
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10041587 [exp]	7.4	0.9395
AT4G39790			Protein of unknown function (D...		Lus10041710 [exp]	8.8	0.9388
AT1G21730			P-loop containing nucleoside t...		Lus10025688 [exp]	8.8	0.9382
AT5G67610			Uncharacterized conserved prot...		Lus10019263 [exp]	9.3	0.9081
AT2G05760			Xanthine/uracil permease famil...		Lus10030014 [exp]	9.9	0.9325

Compare expression of checked genes

Lus10019042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.