Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52980 202 / 1e-65 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005024 [exp] 345 / 2e-122 AT5G52980 236 / 3e-79 unknown protein Lus10000151 [exp] 204 / 6e-68 AT5G52980 174 / 2e-56 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G093800 [exp] 209 / 1e-68 AT5G52980 223 / 6e-74 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11712 [flax] [poplar] Vma12 Endoplasmic reticulum-based factor for assembly of V-ATPase
Representative CDS sequence Show only first row Show all	>Lus10019043 pacid=23152694 polypeptide=Lus10019043 locus=Lus10019043.g ID=Lus10019043.BGIv1.0 annot-version=v1.0 ATGGATATGAGCTCTGTAGAAAGTCCATCAGATTCCCCTGGTTTGGTCGTGAAGAACAAAGATCGTATTCAATCTTTTCTCCTTTCCGCCTCCAATGAAC CAGGCCTTCCTCAGGATTTGAAACATCTTGCATCTAGTTTGCTGTCTTTGGACAGTGTTCCCTATGCGTCTCTCCGAAGTATATGGTTGAGATCTCAGCC GTCTAGCAGACCAGAATTGATTCTTCTCTTCTCAGGATGTGAACTTGTCTTCCCCTGCATTAAACAAAGAGAAAGGAGTGAAGAACTGAAGGCAAGGTTG AGGAAACTTGAGGAGTTAGCGGAGAGAAAGGCCTATCAGGAACTAGTCAAGGATATTACCCCAAGAAAAGATACGAATGAACCCTTCTCTTCTTACAAGG ATCAGCTTGGTTTTGGTCTGCATGTTGGTCTGACCATGTTCACTGGATATTTAGTTGGATATGCAGCATTCAGAGCATTGTTCGGGCGCACTCCTGCCAT GAGCGCTGCTGGAGGAATTCTGGGACTTGTCTTTGGGATGCTTGTGGAAACCCTTCTTTTCATAATTAGAACATCTAGTGATCAAGCTCCCAAACAATAC AAATCCACATCCAAGGTAAAGAAGCAGTAG
AA sequence Show only first row Show all	>Lus10019043 pacid=23152694 polypeptide=Lus10019043 locus=Lus10019043.g ID=Lus10019043.BGIv1.0 annot-version=v1.0 MDMSSVESPSDSPGLVVKNKDRIQSFLLSASNEPGLPQDLKHLASSLLSLDSVPYASLRSIWLRSQPSSRPELILLFSGCELVFPCIKQRERSEELKARL RKLEELAERKAYQELVKDITPRKDTNEPFSSYKDQLGFGLHVGLTMFTGYLVGYAAFRALFGRTPAMSAAGGILGLVFGMLVETLLFIIRTSSDQAPKQY KSTSKVKKQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52980			unknown protein		Lus10019043 [exp]	0	1
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10016879 [exp]	9.5	0.7562
AT5G57440		GPP2, GS1	GLYCEROL-3-PHOSPHATASE 2, Halo...		Lus10006954 [exp]	24.9	0.7126
AT4G00755			F-box family protein (.1.2)		Lus10038879 [exp]	50.1	0.6092
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10019197 [exp]	55.6	0.6559
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10032340 [exp]	58.8	0.6629
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10036834 [exp]	68.2	0.6580
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Lus10033676 [exp]	82.1	0.6625
AT3G26020			Protein phosphatase 2A regulat...		Lus10031536 [exp]	89.3	0.6201
AT1G16010		AtMRS2-1, AtMGT...	magnesium transporter 2 (.1.2....		Lus10026063 [exp]	102.0	0.5950
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10002355 [exp]	162.8	0.6113

Compare expression of checked genes

Lus10019043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.