Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51950 268 / 8e-82 C3HZnF Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) AT5G12440 257 / 8e-77 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) AT3G21100 251 / 3e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G63450 197 / 7e-57 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT1G51520 193 / 3e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G05160 129 / 1e-31 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) AT1G51530 91 / 3e-19 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G52980 104 / 5e-11 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1) AT3G13224 45 / 7e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G14300 44 / 0.0004 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027351 [exp] 347 / 5e-116 AT3G21100 235 / 6e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039575 [exp] 332 / 6e-106 AT3G51950 427 / 3e-144 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10005319 [exp] 311 / 4e-98 AT3G51950 420 / 2e-141 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10014914 [exp] 305 / 6e-97 AT5G12440 151 / 4e-42 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) Lus10009964 [exp] 254 / 1e-78 AT3G51950 215 / 3e-64 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10014915 [exp] 252 / 9e-76 AT3G21100 384 / 7e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10019042 [exp] 238 / 5e-70 AT3G21100 368 / 6e-120 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10005023 [exp] 233 / 2e-68 AT3G21100 380 / 4e-125 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10027350 [exp] 207 / 3e-59 AT3G21100 327 / 4e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G050700 [exp] 431 / 7e-143 AT3G51950 362 / 4e-117 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.003G204300 [exp] 409 / 4e-134 AT3G51950 342 / 1e-109 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G020300 [exp] 387 / 1e-125 AT3G51950 330 / 1e-104 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G255532 [exp] 377 / 3e-122 AT3G51950 347 / 8e-112 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G255400 [exp] 325 / 4e-102 AT3G21100 338 / 2e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G050600 [exp] 312 / 2e-97 AT3G21100 360 / 4e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G165500 [exp] 156 / 1e-40 AT2G05160 513 / 8e-178 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.002G221100 [exp] 140 / 3e-35 AT2G05160 469 / 1e-160 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.001G276300 [exp] 59 / 1e-09 AT5G12440 80 / 3e-17 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) Potri.014G161600 [exp] 44 / 0.0002 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10019044 pacid=23152654 polypeptide=Lus10019044 locus=Lus10019044.g ID=Lus10019044.BGIv1.0 annot-version=v1.0 ATGGATTCCTACGAAGCTACAAAGACAGTGTTCTCAAGGATCCAATCCCTCGACCCAGACAACTCCTCCAAAATCATGGGCTACCTCCTTCTTCAAGACC AAGGAGACAAGGAAATGATTCGTTTAGCTTTCGGACCTGAATCTTCCCTCCACAATCTCATCCTCCAGGCCAAAACCCAATTAGGCTTACCAATTTCCCC TTCTTCTTCTTCTTCCACTTCTTCCATTTCTTCTTCCGCCTCTGCATCTAACAACACTCCTTCAACGCCTTCAACTCCTTCTTCGCCTTCCCCCTTTTTA TCATCCAGGCCCACTCCTCTGTCATTCTCGAGAATCTCGTATGAGAAATTGCAGACCAACAATAACCCGTCTTCTCCTTCTTCCTTGAGCTGCCTTTCCT ACGCCAATATCGTCAATGGAGGAGCGAATCATAATAATAATAGTAGTAATAGTAATAATAACAACAATCATGGCTTTATGAACGTGCCCATTTCCACCGC CGTAGCTTCTCCGTTCCCCGGACGTGTCACGGATCTCGATTCTGTCGGGTCGTCTTCGGCCGGCGAAGATGCCGCCGCCGTCGGCGGCGGGTTTGGTTGG AAGCCGTGTCTGTACTTCGCCAAGGGATTTTGCAAGAATGGGGAGACCTGCAAGTTCCTTCACGGAGGAGACTCTGCAACTGATGGTGGTTCTGCTGTGA GCTCCTCATTTCCTGAGGAGTTTCTCATGAGATCGAACTCTGCTATCCATCAGAAGTTAGCTGCTGCTGCGCAGTTCACAGCTGGCTCAGTTGCTTCTAA TTTAGCTTACAACAAGTGCATCAATTTACTTCTTCAGCAACAGAGTGATTCAGCAGCTCAAAGATCGGCTGCATTGATGATGGGGGACGAGCTTCAGAAG CTGAACCGGTGCCGGTCTGAGAGGAGCAATGATTTCTCACCGTTGGGATTGGGAGGAGGGATAATGAGCCCAATTGCCAGACAGATCTACTTGACGTTTC CAGCTGATAGTACATTCAGAGAAGAGGATGTTTCCAATTACTTTAGCATTTATGGGCCAGTGCAAGACGTGAGAATCCCATACCAGCAGAAGAGAATGTT TGGATTCGTCACGTTCGTTTACCCAGAAACAGTGAAGCTCATCTTAGCCAAAGGGAACCCTCACTTTGTTTGTGACTCTCGTGTCTTGGTCAAGCCTTAC AAGGAGAAAGGCAAATTCCCTGAAAAGAAGCAGATGGAGAGGGGAGAGTTCTCACCGTCAGCTTGTTCAAGCCCTCGTGGGCTTGATTCCAAAGAACCAT TTGACCTTAACCTTGGACCTAGAATGTTCTACAACACTCAAGAGATGCTACTGAGGAAGAAGCTAGGGGAACAGGCTGATCTGCAGCAAGCCATTGAACT CCATGGAAGGAGGCTTATGAGTCTTCAACTTCTTGACCTGAAAAACCAACACCGTCAGCATCTCCTCCATGGACTCTCGAATGGCTCTCCCGTTTCTTCA CCTACTGCTCTCTCTCGTACTTTCAGTAATCCAGTCCGCGTTAACATCGACCATGAAATTTTTCCCATGCCTGAAGAGAATGGAGGTTGCCTGCAGGATG GTTCTGTAAATGCTGTTCAAGAATTGAATCCTGCTGCTTGCAACGTCCATGTCAATGGAAATGGAAATAACTTCAGTGGAAATGATGAGAAATACTTCAC TGAACAAAATGATCTCCAGGAAAGTTTAGAACATATACTCCCTGATAACCTCTTCAATTCTCCCAAGAAAGCTGCTGGTGACCATCTCAAGACTCCCTTC TCCACTACTCTTGAGATCCCCACGACCAACACTATGACTCCTCTCAAGTCATGTTTTCCTCAATTGCCGAGGTAA
AA sequence Show only first row Show all	>Lus10019044 pacid=23152654 polypeptide=Lus10019044 locus=Lus10019044.g ID=Lus10019044.BGIv1.0 annot-version=v1.0 MDSYEATKTVFSRIQSLDPDNSSKIMGYLLLQDQGDKEMIRLAFGPESSLHNLILQAKTQLGLPISPSSSSSTSSISSSASASNNTPSTPSTPSSPSPFL SSRPTPLSFSRISYEKLQTNNNPSSPSSLSCLSYANIVNGGANHNNNSSNSNNNNNHGFMNVPISTAVASPFPGRVTDLDSVGSSSAGEDAAAVGGGFGW KPCLYFAKGFCKNGETCKFLHGGDSATDGGSAVSSSFPEEFLMRSNSAIHQKLAAAAQFTAGSVASNLAYNKCINLLLQQQSDSAAQRSAALMMGDELQK LNRCRSERSNDFSPLGLGGGIMSPIARQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY KEKGKFPEKKQMERGEFSPSACSSPRGLDSKEPFDLNLGPRMFYNTQEMLLRKKLGEQADLQQAIELHGRRLMSLQLLDLKNQHRQHLLHGLSNGSPVSS PTALSRTFSNPVRVNIDHEIFPMPEENGGCLQDGSVNAVQELNPAACNVHVNGNGNNFSGNDEKYFTEQNDLQESLEHILPDNLFNSPKKAAGDHLKTPF STTLEIPTTNTMTPLKSCFPQLPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10019044 [exp]	0	1
AT2G40980			Protein kinase superfamily pro...		Lus10037692 [exp]	1.4	0.9009
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10022645 [exp]	5.1	0.8570
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10009184 [exp]	10.8	0.8350
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10019391 [exp]	11.6	0.8282
AT3G58100		PDCB5	plasmodesmata callose-binding ...		Lus10002193 [exp]	12.0	0.8280
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10026927 [exp]	16.1	0.8232
AT2G25100			Polynucleotidyl transferase, r...		Lus10008965 [exp]	17.0	0.8156
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10009964 [exp]	17.1	0.8569
AT5G05810		ATL43	RING/U-box superfamily protein...		Lus10023617 [exp]	18.0	0.7872
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10017827 [exp]	21.2	0.8151

Compare expression of checked genes

Lus10019044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.