Plant FIBer expression Database

Lus10019046 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G25680 44 / 2e-05 MOT1 molybdate transporter 1 (.1)
AT1G80310 42 / 8e-05 MOT2 molybdate transporter 2, sulfate transmembrane transporters (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025816
[exp]
98 / 3e-24 AT1G80310 577 / 0.0 molybdate transporter 2, sulfate transmembrane transporters (.1)
Lus10038286
[exp]
75 / 3e-16 AT1G80310 571 / 0.0 molybdate transporter 2, sulfate transmembrane transporters (.1)
Lus10016331
[exp]
49 / 3e-07 AT2G25680 577 / 0.0 molybdate transporter 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G246000
[exp]
52 / 3e-08 AT2G25680 556 / 0.0 molybdate transporter 1 (.1)
Potri.006G245900
[exp]
50 / 9e-08 AT2G25680 496 / 4e-174 molybdate transporter 1 (.1)
PFAM info
Representative CDS sequence
>Lus10019046 pacid=23152676 polypeptide=Lus10019046 locus=Lus10019046.g ID=Lus10019046.BGIv1.0 annot-version=v1.0
ATGGCACAGCGGCATGCAAGCCATGTAGGCCAGATATCCATTCAGATATCCAGTCATCTAACCACCTCTCATATCGCCCCCGCCGGCATCTCCACCGCCA
CTAACCTCCTGTTCCTTGGGGCCTCTGCCCTCATGCCCCTCATCTACCGTTACCTCCCTCTCTCAATCGTCTACAGCATCCAGCTTCGCCTTCTCCACAA
TCAAGTACATCAATTTAATCAAGACTTCCTCTCTTCCAAATCCACCACTCCCAAATACTGGCTCGACCTTGGCAGAATCCTTCTCGCCCTCTCTGCCATC
CTATTCCTCGTCCTCACCATCGGCTCCGGCGTTGAAACCACCTCTGAATCCGACGAGACCACCCAATCTCGCGCAAGACGGCTTCGGGCGGCATGCAAGC
CATGTAGGCCAGATATCCATTCAGATATCCAGTCATCTAACCACCTCTCATATCGCCCCCGCCGGCATCTCCACCGCCACTAA
AA sequence
>Lus10019046 pacid=23152676 polypeptide=Lus10019046 locus=Lus10019046.g ID=Lus10019046.BGIv1.0 annot-version=v1.0
MAQRHASHVGQISIQISSHLTTSHIAPAGISTATNLLFLGASALMPLIYRYLPLSIVYSIQLRLLHNQVHQFNQDFLSSKSTTPKYWLDLGRILLALSAI
LFLVLTIGSGVETTSESDETTQSRARRLRAACKPCRPDIHSDIQSSNHLSYRPRRHLHRH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G25680 MOT1 molybdate transporter 1 (.1) Lus10019046
[exp]
0 1
AT3G21690 MATE efflux family protein (.1... Lus10020049
[exp]
3.3 0.8031
AT2G26890 KAM2, GRV2 KATAMARI2, GRAVITROPISM DEFECT... Lus10033078
[exp]
3.5 0.7265
Lus10030050
[exp]
16.1 0.6777
AT3G48360 ATBT2, BT2 BTB and TAZ domain protein 2 (... Lus10018087
[exp]
17.8 0.7403
Lus10042276
[exp]
19.7 0.7047
Lus10010449
[exp]
21.9 0.7208
AT5G65550 UDP-Glycosyltransferase superf... Lus10043445
[exp]
37.1 0.6926
AT4G13250 NYC1, NYC NON-YELLOW COLORING 1, NAD(P)-... Lus10023644
[exp]
38.2 0.7022
AT1G09080 BIP3 binding protein 3, Heat shock ... Lus10031206
[exp]
42.4 0.6168
AT2G21660 CCR2, ATGRP7, G... GLYCINE-RICH RNA-BINDING PROTE... Lus10042320
[exp]
45.2 0.6430

Lus10019046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.