Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58060 362 / 3e-129 ATYKT61, ATGP1, YKT61 SNARE-like superfamily protein (.1.2) AT5G58180 322 / 2e-113 ATYKT62 Synaptobrevin family protein (.1.2) AT5G11150 59 / 1e-10 ATVAMP713 vesicle-associated membrane protein 713 (.1) AT4G32150 56 / 9e-10 ATVAMP711, VAMP7C vesicle-associated membrane protein 711 (.1) AT1G11890 50 / 1e-07 ATSEC22, SEC22 SECRETION 22, Synaptobrevin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036297 [exp] 413 / 1e-149 AT5G58060 364 / 3e-130 SNARE-like superfamily protein (.1.2) Lus10001492 [exp] 51 / 1e-07 AT5G11150 367 / 1e-130 vesicle-associated membrane protein 713 (.1) Lus10008135 [exp] 49 / 4e-07 AT1G11890 363 / 7e-129 SECRETION 22, Synaptobrevin family protein (.1) Lus10036987 [exp] 49 / 7e-07 AT1G11890 415 / 6e-150 SECRETION 22, Synaptobrevin family protein (.1) Lus10013175 [exp] 47 / 2e-06 AT1G11890 411 / 2e-148 SECRETION 22, Synaptobrevin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G187700 [exp] 376 / 5e-135 AT5G58060 381 / 5e-137 SNARE-like superfamily protein (.1.2) Potri.018G110700 [exp] 367 / 3e-131 AT5G58060 375 / 8e-135 SNARE-like superfamily protein (.1.2) Potri.006G256200 [exp] 59 / 7e-11 AT4G32150 352 / 5e-125 vesicle-associated membrane protein 711 (.1) Potri.018G025800 [exp] 59 / 2e-10 AT4G32150 366 / 2e-130 vesicle-associated membrane protein 711 (.1) Potri.018G125900 [exp] 56 / 1e-09 AT4G32150 276 / 1e-94 vesicle-associated membrane protein 711 (.1) Potri.001G050400 [exp] 47 / 1e-06 AT2G33120 365 / 4e-130 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.001G165600 [exp] 47 / 1e-06 AT1G11890 427 / 9e-155 SECRETION 22, Synaptobrevin family protein (.1) Potri.003G069900 [exp] 47 / 2e-06 AT1G11890 429 / 2e-155 SECRETION 22, Synaptobrevin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00957 [flax] [poplar] Synaptobrevin Synaptobrevin
Representative CDS sequence Show only first row Show all	>Lus10019047 pacid=23152666 polypeptide=Lus10019047 locus=Lus10019047.g ID=Lus10019047.BGIv1.0 annot-version=v1.0 ATGAAGATCACGGCGCTTTTGGTCTTGAAGTGCAACCCGGATTCTTCGGATCCGATCATTTTAGCGAACGCCTCTGACGTCAGCCGTTTCGGATACTTCC AACGGCCTAGCGTCAGGGAATTCATAGTCTTCGTCGGCCGGACCGTCGCCAAACGCACTCCTTCCGGTCAACGTCAGTCTGTTCAGCACGAAGAATATAA GGTGCACGCTTACAACATAAATGGACTTTGTGCTGTGGGATTTATGGATGATCACTATCCTGTTCGCAGTGCATTTTCAGTTCTTAATCAGGTGGTTGAT GAGTATCAAAAGAATTTTGGTGATTCATGGAGGGCAGCACAGGCAGATTGCACTCAGAATTGGCAATACTTGGATGAAGCATTGATTAAGTTCCAAGATC CTGCTGAGGCAGACAAGTTGTTGAGAATTCAAAGGGAGTTGGATGAGACAAAAATTATCCTCCATAAAACCATTGACAGTGTACTTGCCCGAGGTGAAAA GCTGGACAGTTTAGTCGAAAAAAGTTCAGATCTCAGTGCTGCATCCCAGATGTTCTACAAGCAGGCGAAGAAAACGAATTCTTGCTGTACCGTTCTGTAA
AA sequence Show only first row Show all	>Lus10019047 pacid=23152666 polypeptide=Lus10019047 locus=Lus10019047.g ID=Lus10019047.BGIv1.0 annot-version=v1.0 MKITALLVLKCNPDSSDPIILANASDVSRFGYFQRPSVREFIVFVGRTVAKRTPSGQRQSVQHEEYKVHAYNINGLCAVGFMDDHYPVRSAFSVLNQVVD EYQKNFGDSWRAAQADCTQNWQYLDEALIKFQDPAEADKLLRIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNSCCTVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10019047 [exp]	0	1
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10036297 [exp]	1.0	0.9508
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10016623 [exp]	2.4	0.8998
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10022524 [exp]	2.4	0.9108
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10025319 [exp]	2.6	0.8657
AT3G52560		MMZ4 ,UEV1D ,UE...	MMS2 ZWEI HOMOLOGUE 4, ubiquit...		Lus10029415 [exp]	3.5	0.8735
AT5G22950		VPS24.1	SNF7 family protein (.1)		Lus10021423 [exp]	4.0	0.8765
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Lus10032963 [exp]	5.0	0.8737
AT2G36060		MMZ3 ,UEV1C	UBIQUITIN E2 VARIANT 1C, MMS Z...		Lus10004211 [exp]	5.7	0.7963
AT1G75950		UIP1, SKP1A, AT...	UFO INTERACTING PROTEIN 1, ARA...		Lus10013575 [exp]	6.7	0.8293
AT1G16890		UBC36 ,UBC13B	UBIQUITIN CONJUGATING ENZYME 1...		Lus10017654 [exp]	7.2	0.8054

Compare expression of checked genes

Lus10019047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.