Plant FIBer expression Database

Lus10019048 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G58070 276 / 6e-96 ATTIL temperature-induced lipocalin (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036298
[exp]
348 / 3e-124 AT5G58070 297 / 3e-104 temperature-induced lipocalin (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G110800
[exp]
273 / 1e-94 AT5G58070 310 / 3e-109 temperature-induced lipocalin (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0116 Calycin PF08212 Lipocalin_2 Lipocalin-like domain
Representative CDS sequence
>Lus10019048 pacid=23152681 polypeptide=Lus10019048 locus=Lus10019048.g ID=Lus10019048.BGIv1.0 annot-version=v1.0
ATGTCGACCGACAAGCAGATGGAAGTGGTGAAGGGCCTAGACGTGCAGCGATACATGGGGCGCTGGTACGAGATTGCCTCGTTTCCGTCCCTTTTCCAGC
CCAGAAACGGCCAGGACACCCGCGCCACCTACACTTTGAAAGACGATGGAGCCACCGTCAACGTCCTCAACGAGACCTGGAGCGACGGAAAACGGAGCTC
CATCGAAGGGATCGCGTACAAGGCGGATCCCAATTCCGACGAGGCCAAGCTCAAAGTTAAGTTCTACGTCCCGCCTTTCTTGCCTCTGTTCCCAGTGGTT
GGGGATTACTGGGTTCTCTACATTGACGAGGCCTACCAGTATGCTCTGATTGGCCAGCCTAGCCGCAAGTATCTCTGGATACTGTGCAGGAACCCTCATA
TGGAGGAAGAAGTGTACAAGCAAATGGTGGAGAAGGCAAAAGAAGAAGGGTACGATGTGAGCAAGCTGAAGAGAACAGCACAGAGCGATTCCCCACCAGA
GGCAGACAAAGGTCCTGAAGACAAGAAGGGGTTGTGGTGGATCAAGTCCCTCTTTGGCAAATAA
AA sequence
>Lus10019048 pacid=23152681 polypeptide=Lus10019048 locus=Lus10019048.g ID=Lus10019048.BGIv1.0 annot-version=v1.0
MSTDKQMEVVKGLDVQRYMGRWYEIASFPSLFQPRNGQDTRATYTLKDDGATVNVLNETWSDGKRSSIEGIAYKADPNSDEAKLKVKFYVPPFLPLFPVV
GDYWVLYIDEAYQYALIGQPSRKYLWILCRNPHMEEEVYKQMVEKAKEEGYDVSKLKRTAQSDSPPEADKGPEDKKGLWWIKSLFGK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G58070 ATTIL temperature-induced lipocalin ... Lus10019048
[exp]
0 1
AT3G46630 Protein of unknown function (D... Lus10018738
[exp]
1.4 0.9140
AT5G58070 ATTIL temperature-induced lipocalin ... Lus10036298
[exp]
3.7 0.8593
AT3G10540 3-phosphoinositide-dependent p... Lus10037921
[exp]
4.0 0.8851
AT3G07360 ATPUB9 ARABIDOPSIS THALIANA PLANT U-B... Lus10009594
[exp]
6.7 0.8367
AT4G31560 HCF153 high chlorophyll fluorescence ... Lus10039571
[exp]
9.5 0.8674
AT5G43830 Aluminium induced protein with... Lus10041181
[exp]
9.9 0.8149
AT5G35790 G6PD1 glucose-6-phosphate dehydrogen... Lus10012339
[exp]
11.0 0.8512
AT3G19800 Protein of unknown function (D... Lus10040969
[exp]
13.3 0.8755
AT2G23820 Metal-dependent phosphohydrola... Lus10019968
[exp]
15.4 0.8375
AT5G35790 G6PD1 glucose-6-phosphate dehydrogen... Lus10012340
[exp]
16.5 0.8355

Lus10019048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.