Plant FIBer expression Database

Lus10019052 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007260
[exp]
61 / 9e-12 ND /
Lus10027017
[exp]
56 / 3e-10 ND /
Lus10005020
[exp]
56 / 8e-10 ND /
Lus10008569
[exp]
52 / 4e-08 AT1G48120 50 / 6e-07 hydrolases;protein serine/threonine phosphatases (.1)
Lus10022987
[exp]
50 / 7e-08 ND /
Lus10017809
[exp]
49 / 2e-07 ND /
Lus10021781
[exp]
46 / 9e-07 ND /
Lus10032970
[exp]
46 / 1e-06 ND /
Lus10025324
[exp]
47 / 3e-06 AT3G53720 432 / 3e-143 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10019052 pacid=23152668 polypeptide=Lus10019052 locus=Lus10019052.g ID=Lus10019052.BGIv1.0 annot-version=v1.0
ATGACCTCTGCCCCTCCAGTGATCTACTCTAGGGTAATCTCCGATGTCGCACATGGTTTATCGAGGATGGGGTCGCAAATCAAGTCGATGCCCTCTCCGA
GGAGTTGGTTCCAACGTGAGACATCTGAGGGACCCACTACTGTCTCTACTATTGTGACTGTTGTGACTACTACTGAAACTAAGGAGGCTGTTATGCCCAC
TGTTGTGACTGAGAAGCATACTCCTAGTGCTGCGACTGAGTCTCCGGCCGGTACTGTTGTGCGGGTGGGTGTTGCTGGGCGCGGAAGAGTGACAAGTCGG
GGTGTACGGTCGCGGAAATATTTTTGCCTCGTGGACCCGCTGGCGTTGTGTCCGTCTTGCAGCGGGGATAGCCGCCTGACTCAATGGCTCAACGGCGTAC
GGGTCATACGACTGGTAGATTTGTCCAATGGGGTCCATCTGTGGGTGATGCCGCAGGTCGTGCAGCGTATGCTCCATGCCTTCGGTTACATGCACATGGA
ACATAGACACCGTCGAACCGCCTCAGTATCCTCTCTATCAAGCTGCTCCTGTCTCCAACCAGTCAATCTATAA
AA sequence
>Lus10019052 pacid=23152668 polypeptide=Lus10019052 locus=Lus10019052.g ID=Lus10019052.BGIv1.0 annot-version=v1.0
MTSAPPVIYSRVISDVAHGLSRMGSQIKSMPSPRSWFQRETSEGPTTVSTIVTVVTTTETKEAVMPTVVTEKHTPSAATESPAGTVVRVGVAGRGRVTSR
GVRSRKYFCLVDPLALCPSCSGDSRLTQWLNGVRVIRLVDLSNGVHLWVMPQVVQRMLHAFGYMHMEHRHRRTASVSSLSSCSCLQPVNL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10019052
[exp]
0 1
AT1G65330 MADS AGL37, PHE1 PHERES1, AGAMOUS-like 37, MADS... Lus10004150
[exp]
1.4 0.9966
AT3G29810 COBL2 COBRA-like protein 2 precursor... Lus10026288
[exp]
1.7 0.9809
AT5G04885 Glycosyl hydrolase family prot... Lus10013388
[exp]
2.0 0.9911
AT5G17230 PSY PHYTOENE SYNTHASE (.1.2.3) Lus10039186
[exp]
4.9 0.9795
Lus10001031
[exp]
18.5 0.9345
AT1G78960 ATLUP2 lupeol synthase 2 (.1) Lus10033355
[exp]
24.2 0.9495
AT1G72460 Leucine-rich repeat protein ki... Lus10015678
[exp]
29.1 0.9632
AT1G50310 ATSTP9 sugar transporter 9 (.1) Lus10013441
[exp]
32.2 0.9626
AT4G12520 Bifunctional inhibitor/lipid-t... Lus10024627
[exp]
35.0 0.9626
Lus10003843
[exp]
37.6 0.9619

Lus10019052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.