Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30996 237 / 6e-81 NKS1 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1) AT2G24290 221 / 1e-74 Protein of unknown function (DUF1068) (.1) AT2G32580 115 / 7e-33 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) AT1G05070 110 / 6e-31 Protein of unknown function (DUF1068) (.1) AT4G04360 96 / 3e-25 Protein of unknown function (DUF1068) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036299 [exp] 301 / 3e-106 AT2G24290 257 / 1e-88 Protein of unknown function (DUF1068) (.1) Lus10035288 [exp] 119 / 3e-34 AT1G05070 252 / 1e-86 Protein of unknown function (DUF1068) (.1) Lus10030034 [exp] 116 / 5e-33 AT1G05070 250 / 1e-85 Protein of unknown function (DUF1068) (.1) Lus10015556 [exp] 101 / 2e-27 AT1G05070 179 / 4e-58 Protein of unknown function (DUF1068) (.1) Lus10020038 [exp] 99 / 3e-26 AT1G05070 167 / 4e-53 Protein of unknown function (DUF1068) (.1) Lus10029975 [exp] 80 / 6e-19 AT2G32580 109 / 3e-30 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Lus10035349 [exp] 79 / 2e-18 AT2G32580 110 / 2e-30 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G187800 [exp] 264 / 2e-91 AT4G30996 198 / 1e-65 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1) Potri.018G111100 [exp] 260 / 4e-90 AT4G30996 208 / 2e-69 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1) Potri.014G155600 [exp] 125 / 2e-36 AT2G32580 245 / 1e-83 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Potri.002G227100 [exp] 123 / 7e-36 AT2G32580 218 / 6e-73 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Potri.004G006500 [exp] 119 / 2e-34 AT2G32580 206 / 6e-68 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Potri.013G026900 [exp] 106 / 4e-29 AT2G24290 114 / 2e-32 Protein of unknown function (DUF1068) (.1) Potri.005G038000 [exp] 103 / 3e-28 AT1G05070 110 / 7e-31 Protein of unknown function (DUF1068) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06364 [flax] [poplar] DUF1068 Protein of unknown function (DUF1068)
Representative CDS sequence Show only first row Show all	>Lus10019053 pacid=23152693 polypeptide=Lus10019053 locus=Lus10019053.g ID=Lus10019053.BGIv1.0 annot-version=v1.0 ATGTCGAGGAGATCGGGAGCTTGCTTGAGGTGTTGTCTGGTGATATTCGCTGTCGTATCGGCTCTCGGAGTGTGCGGCCCGGCAATCTATTGGAGATTTA AGAAGACGATGAGGCTATCTGATTCAAACGCATCTTCATGTCCTCCTTGCGCCTGCGATTGTCCGCCTCCCTTGTCTCTCCTCAAGATTGCTCCCGGCTT GGCCAATCTCTCAGTCACAGATTGCGGAAGTAGTGATCCAGAGCTGAAGAAAGAGATGGAGAAGCAGTTTGTAGACCTGCTAACGGAGGAGATGAGACTG CAGGAAGCAGTTGCAGAAGAACACGCACACCACGTGAACATAACATTCGGAGATGCAAAAAGAGTGGCTTCTCAGTACCAAAAGGAAGCAGAGAAGTGTA TCGCTGCGACAGAGACTTGCGAGGGAGCGAGGGAGAGGTCAGAAGCGCTGTTGATTAGAGAGAGGAAGATCACCGCTGTTTGGGAACGAAGAGCTCGCCA AGTGGGTTGGGATGGAGAGTAA
AA sequence Show only first row Show all	>Lus10019053 pacid=23152693 polypeptide=Lus10019053 locus=Lus10019053.g ID=Lus10019053.BGIv1.0 annot-version=v1.0 MSRRSGACLRCCLVIFAVVSALGVCGPAIYWRFKKTMRLSDSNASSCPPCACDCPPPLSLLKIAPGLANLSVTDCGSSDPELKKEMEKQFVDLLTEEMRL QEAVAEEHAHHVNITFGDAKRVASQYQKEAEKCIAATETCEGARERSEALLIRERKITAVWERRARQVGWDGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24290			Protein of unknown function (D...		Lus10019053 [exp]	0	1
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10005772 [exp]	1.4	0.8077
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10012056 [exp]	2.4	0.7887
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10010795 [exp]	5.5	0.7684
AT2G24290			Protein of unknown function (D...		Lus10036299 [exp]	6.5	0.7859
AT5G42860			unknown protein		Lus10009749 [exp]	6.8	0.7945
AT1G35510			O-fucosyltransferase family pr...		Lus10009450 [exp]	9.2	0.7562
AT5G23730		EFO2, RUP2	REPRESSOR OF UV-B PHOTOMORPHOG...		Lus10027454 [exp]	10.6	0.7879
AT1G14390			Leucine-rich repeat protein ki...		Lus10030785 [exp]	13.2	0.7414
AT5G66580			unknown protein		Lus10019659 [exp]	17.0	0.7448
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10001712 [exp]	17.5	0.7602

Compare expression of checked genes

Lus10019053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.