Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56670 47 / 1e-07 Ribosomal protein S30 family protein (.1) AT4G29390 47 / 1e-07 Ribosomal protein S30 family protein (.1) AT2G19750 47 / 1e-07 Ribosomal protein S30 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002508 [exp] 65 / 5e-14 AT4G29390 98 / 4e-29 Ribosomal protein S30 family protein (.1) Lus10017473 [exp] 65 / 5e-14 AT5G56670 98 / 4e-29 Ribosomal protein S30 family protein (.1) Lus10028808 [exp] 65 / 5e-14 AT5G56670 73 / 3e-19 Ribosomal protein S30 family protein (.1) Lus10012943 [exp] 48 / 1e-06 ND / Lus10032473 [exp] 44 / 3e-05 ND / Lus10014485 [exp] 42 / 0.0001 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G086600 [exp] 51 / 8e-09 AT5G56670 97 / 5e-29 Ribosomal protein S30 family protein (.1) Potri.015G084700 [exp] 51 / 8e-09 AT5G56670 97 / 5e-29 Ribosomal protein S30 family protein (.1) Potri.014G147200 [exp] 51 / 8e-09 AT5G56670 97 / 5e-29 Ribosomal protein S30 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04758 [flax] [poplar] Ribosomal_S30 Ribosomal protein S30
Representative CDS sequence Show only first row Show all	>Lus10019054 pacid=23152667 polypeptide=Lus10019054 locus=Lus10019054.g ID=Lus10019054.BGIv1.0 annot-version=v1.0 ATGGGTAAGAAAGGTTCATGGATCTTTGGCTCGTGCGGGAAGGTGAGAGGACAAACACCTAAGGTAGCGAAGCAAGAGAAGAAGAAGAGGCCACGCAGCC ATGCACACAAGAGGATGCAGTATGCTAGACGTTTCGTCACCGCCGGGAATGAAATCAAACAAGGGTTGACACCTTTGGAAGGAGAAGCAGATATTACTGG TTTCTATCTTGCCGTGAATGATTTATTGTTGATGAAGCTGTATCTGAAGCAGTTAACTGAAGAACAACCGAAGCTATGGGCGTTTAGGCTAGCAATGGAC TTATGGTATGGTTCAGTCCCTCCATTTGCAAGACAAGGTCTTGTATTAGAAGAGCTTGGTTCCGAAGAGGATAAGGGAGTTGGTAGAGAGGCAGCGACAT CTTCTTCAAGTGTGATGCCTCACGACATTGAGCACCCTGATGAGGTGGAGAAACATGATGTCATTCAGCAGCCTGATGACGTTGAGCAGCCTGATGTGGC TGACGCAGCCGAACAAATATGGAACGAGCTCTTGGAGGAGTATGAATTGGAATTGGCGGCTGAACAAGCAGAATGGCATGAACAAATGGCATCTGGAAGA GTTTCGGATTTAGAGTTTGATGTACAACCGGACTCTGACCCGGATGACTATCTCTTTGGACTCCAAGGTTGA
AA sequence Show only first row Show all	>Lus10019054 pacid=23152667 polypeptide=Lus10019054 locus=Lus10019054.g ID=Lus10019054.BGIv1.0 annot-version=v1.0 MGKKGSWIFGSCGKVRGQTPKVAKQEKKKRPRSHAHKRMQYARRFVTAGNEIKQGLTPLEGEADITGFYLAVNDLLLMKLYLKQLTEEQPKLWAFRLAMD LWYGSVPPFARQGLVLEELGSEEDKGVGREAATSSSSVMPHDIEHPDEVEKHDVIQQPDDVEQPDVADAAEQIWNELLEEYELELAAEQAEWHEQMASGR VSDLEFDVQPDSDPDDYLFGLQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56670			Ribosomal protein S30 family p...		Lus10019054 [exp]	0	1
AT1G21000			PLATZ transcription factor fam...		Lus10005350 [exp]	1.4	1.0000
AT5G52605			Defensin-like (DEFL) family pr...		Lus10031095 [exp]	2.0	1.0000
					Lus10035508 [exp]	3.0	1.0000
AT4G16640			Matrixin family protein (.1)		Lus10037419 [exp]	3.2	0.9815
					Lus10034814 [exp]	3.5	0.9390
					Lus10005838 [exp]	3.7	0.9193
					Lus10012269 [exp]	4.5	1.0000
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Lus10038956 [exp]	4.9	1.0000
AT5G04347			Plant self-incompatibility pro...		Lus10029375 [exp]	4.9	1.0000
AT5G48540			receptor-like protein kinase-r...		Lus10030777 [exp]	5.3	1.0000

Compare expression of checked genes

Lus10019054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.