Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03000 66 / 5e-14 EF hand calcium-binding protein family (.1) AT1G32250 59 / 2e-11 Calcium-binding EF-hand family protein (.1) AT4G14640 46 / 9e-07 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT3G22930 44 / 4e-06 CML11 calmodulin-like 11 (.1) AT3G25600 44 / 6e-06 Calcium-binding EF-hand family protein (.1) AT1G18530 40 / 0.0001 EF hand calcium-binding protein family (.1) AT1G66410 40 / 0.0001 ACAM-4, CAM4 calmodulin 4 (.1.2) AT5G37780 40 / 0.0001 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT3G56800 40 / 0.0002 ACAM-3, CAM3 calmodulin 3 (.1) AT2G27030 40 / 0.0002 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030986 [exp] 101 / 6e-28 AT1G32250 219 / 3e-74 Calcium-binding EF-hand family protein (.1) Lus10035383 [exp] 98 / 1e-26 AT1G32250 152 / 8e-48 Calcium-binding EF-hand family protein (.1) Lus10004610 [exp] 58 / 4e-11 AT3G03000 243 / 3e-83 EF hand calcium-binding protein family (.1) Lus10039391 [exp] 49 / 7e-08 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10017900 [exp] 46 / 2e-06 AT3G25600 252 / 4e-87 Calcium-binding EF-hand family protein (.1) Lus10041288 [exp] 39 / 0.0002 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 39 / 0.0002 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 39 / 0.0002 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10027283 [exp] 39 / 0.0002 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G138000 [exp] 66 / 3e-14 AT3G03000 221 / 8e-75 EF hand calcium-binding protein family (.1) Potri.003G095700 [exp] 64 / 1e-13 AT3G03000 220 / 1e-74 EF hand calcium-binding protein family (.1) Potri.010G080900 [exp] 49 / 4e-08 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.008G159300 [exp] 46 / 1e-06 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.010G132800 [exp] 44 / 8e-06 AT3G25600 229 / 4e-78 Calcium-binding EF-hand family protein (.1) Potri.015G052600 [exp] 40 / 0.0001 AT1G18530 213 / 8e-72 EF hand calcium-binding protein family (.1) Potri.006G026700 [exp] 39 / 0.0002 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 39 / 0.0002 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.016G024700 [exp] 39 / 0.0002 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.015G032600 [exp] 39 / 0.0003 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019055 pacid=23152658 polypeptide=Lus10019055 locus=Lus10019055.g ID=Lus10019055.BGIv1.0 annot-version=v1.0 ATGAAAGGAAGTCATATTGTCGACCTTCGCCAGATCTTTCCCTCCTTCGACCGAGACAGCGACGGTAGCTTGACTCAGCTCGAATTAGGCTCCTTGCTCC GAACGCTGGGTCTCAACCCCAACTCGGAGCAGCTCGACGCCCTGATCAAGACCGCCGACAAAAACAGCGACAACACGGTCGAGTTCTCTGAGTTTCTAGC GCTTGTAGCGCCTGATCTTATTCGGCAACATCCAGCGGAGGAGACAGTGAGGAGATGTCTCCGTACAGCGAGGAGCAGCTGTTCAGGATGTTTGACCGGG ACGGCAACGGTTCTTCTCACCGGAATCCTCCAAGAAACGAACCACAGTACGATCCACAAGGAGAAATACGGCTTGTTCGACAATTGCAGTCATGGAGGAT CGAAAAGACCGGAATCTCCTGGAAAAGCTGTTTGTGCATAG
AA sequence Show only first row Show all	>Lus10019055 pacid=23152658 polypeptide=Lus10019055 locus=Lus10019055.g ID=Lus10019055.BGIv1.0 annot-version=v1.0 MKGSHIVDLRQIFPSFDRDSDGSLTQLELGSLLRTLGLNPNSEQLDALIKTADKNSDNTVEFSEFLALVAPDLIRQHPAEETVRRCLRTARSSCSGCLTG TATVLLTGILQETNHSTIHKEKYGLFDNCSHGGSKRPESPGKAVCA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32250			Calcium-binding EF-hand family...		Lus10019055 [exp]	0	1
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10003277 [exp]	4.9	1.0000
					Lus10001326 [exp]	8.5	1.0000
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10001774 [exp]	10.0	1.0000
AT1G18100		MFT, E12A11	MOTHER OF FT AND TFL1, PEBP (p...		Lus10002592 [exp]	13.3	1.0000
					Lus10022172 [exp]	15.9	1.0000
AT4G22756		ATSMO1-2, ATSMO...	sterol C4-methyl oxidase 1-2 (...		Lus10028908 [exp]	16.5	1.0000
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	18.2	1.0000
					Lus10021612 [exp]	19.0	1.0000
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10023221 [exp]	19.6	1.0000
					Lus10025806 [exp]	20.2	1.0000

Compare expression of checked genes

Lus10019055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.