Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24300 705 / 0 Calmodulin-binding protein (.1.2) AT4G31000 656 / 0 Calmodulin-binding protein (.1.2) AT4G25800 573 / 0 Calmodulin-binding protein (.1.2) AT2G18750 571 / 0 Calmodulin-binding protein (.1.2.3) AT5G57580 553 / 0 Calmodulin-binding protein (.1) AT5G62570 313 / 6e-100 Calmodulin binding protein-like (.1.2) AT1G73805 276 / 5e-86 SARD1 SAR Deficient 1, Calmodulin binding protein-like (.1) AT5G26920 243 / 3e-72 CBP60G Cam-binding protein 60-like G (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036301 [exp] 1113 / 0 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10018437 [exp] 578 / 0 AT5G57580 746 / 0.0 Calmodulin-binding protein (.1) Lus10011248 [exp] 533 / 0 AT5G57580 751 / 0.0 Calmodulin-binding protein (.1) Lus10001630 [exp] 505 / 1e-172 AT5G57580 811 / 0.0 Calmodulin-binding protein (.1) Lus10001436 [exp] 504 / 5e-172 AT5G57580 809 / 0.0 Calmodulin-binding protein (.1) Lus10034121 [exp] 306 / 8e-97 AT5G62570 396 / 1e-133 Calmodulin binding protein-like (.1.2) Lus10020686 [exp] 306 / 1e-95 AT4G25800 334 / 1e-106 Calmodulin-binding protein (.1.2) Lus10029861 [exp] 302 / 3e-94 AT4G25800 332 / 2e-106 Calmodulin-binding protein (.1.2) Lus10043463 [exp] 247 / 1e-72 AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G187900 [exp] 852 / 0 AT2G24300 770 / 0.0 Calmodulin-binding protein (.1.2) Potri.018G111200 [exp] 844 / 0 AT2G24300 759 / 0.0 Calmodulin-binding protein (.1.2) Potri.011G043300 [exp] 595 / 0 AT5G57580 770 / 0.0 Calmodulin-binding protein (.1) Potri.011G043200 [exp] 588 / 0 AT5G57580 752 / 0.0 Calmodulin-binding protein (.1) Potri.004G035100 [exp] 540 / 0 AT5G57580 792 / 0.0 Calmodulin-binding protein (.1) Potri.018G095300 [exp] 526 / 0 AT5G57580 820 / 0.0 Calmodulin-binding protein (.1) Potri.015G071800 [exp] 380 / 9e-125 AT5G62570 499 / 4e-173 Calmodulin binding protein-like (.1.2) Potri.012G077000 [exp] 361 / 2e-117 AT5G62570 493 / 1e-170 Calmodulin binding protein-like (.1.2) Potri.013G010700 [exp] 324 / 5e-103 AT4G25800 331 / 6e-106 Calmodulin-binding protein (.1.2) Potri.012G054900 [exp] 312 / 2e-100 AT1G73805 407 / 1e-139 SAR Deficient 1, Calmodulin binding protein-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07887 [flax] [poplar] Calmodulin_bind Calmodulin binding protein-like
Representative CDS sequence Show only first row Show all	>Lus10019056 pacid=23152661 polypeptide=Lus10019056 locus=Lus10019056.g ID=Lus10019056.BGIv1.0 annot-version=v1.0 ATGGATGGTTTCAGAGGGAGGAGAGTTGATAAGAGAGGATATGAACAGAATACTGAAGATGAGAGTGATCGCTTGCCTGAATCCAAGAAACCCAAAATGC CTGCTTTAGCAAGTGTGATTGTGGAAGCTTTGAAGGTGGATAGTTTACAAAGACTTTGCTCATCTCTGGAGCCTCTCTTCCGTAGAATCGTCAGTGAAGA AGTGGAACGTGCTCTATCAAGGATGGGAAATGCTAAACTATCTGGGAGGTCTTCTCCGCCGAAATTGCCAGGCCCAGGAGAAAAAAGCCTACAGCTTCAT TTCAGAACAAGGATGCCTCCTCATCTGTTCACAGGTGCTAGAGTTGAGGGAGAACAAGGAGCAGCCATCCATGTTGTGTTGATAGACTCAGCTACGGGCA ACGTTGTTCAAATGGGGCCAGAATCGTCTGCCAAATTGAACATCGTAGTTATTGAAGGTGACTTTAATGAGGAGGCTGAAGAAGATTGGACTGCTGAGCA CTTTGAGAATTACGAAGTAAAGGAACGCGAAGGGAAAAGGCCATTGCTGACTGGTGATCTACAGGTGATTCTCAAGGAAGGCGTAGGAACTGTTGGAGAT CTTAGTTTTACTGATAACTCTAGCTGGATAAGGAGCAGGAAGTTCCGGCTCGGTGTCAAGGTTGCTCCTGGACACTGTGAAGGGATTCGTGTTCGTGAGG CCAAGACAGAATCTTTTGCTGTTAAAGATCATAGAGGAGAATTGTACAAGAAACATTACCCACCAGCTTTACACGATGAAGTTTGGAGATTGGATAGAAT AGCAAAGGATGGAGCACTGCACAAGAAATTAGTGAAGTCTCAGATAGTAACCGTTGAAGACTTCCTCCGGCTTCTGGTCAGGGATCCGCAGAAATTGAGA AGTGTCCTTGGAAGTGGGATGTCCAATAGAATGTGGGAGAATACAGTAGAGCATGCAAAGACGTGTGTCTTAGGAGGAAAGCTTTATGTATACTACACTG ATGGAGTTCATAGCACAGGAGTCGTCTTCAACCATATATGTGAGCTGAGAGGCCTTATCTCTCAAGGACAGTTTGTTGCCCTTGAATCACTTGACCACAA TCAAAAGCTTTCTGTGGATTCAATAGTGAAACGAGCATATGAGAACTGGCATCAAGTCATAGAATATGATGGTAAGGTCCTAACTGCTCTTTCCGCGGCG AAAGTTCCAAAGAAAGCCTTGCCACCACCACTACCTCCTGTTGACAGCACCTCCACCACTAATTATGAACCACAACAGTTCATCTCAAACAAGCAACTCT ACATCTCCCCTGAACCACAATGCCAAACCATTCCCCAACCGACTCATTTGATCGATTTCCCATTCGTGAGGACAGATCAAAACACAACAACGACAACCAC CACCGCCTCCATGAGTAATAATCATCAACAAGCAGCATTGGCTAGCAACATGGACTACATGTCAGTAGCGACTCCCGGTGGCTATAATTCAGGAGGAGAC TGGACCCGACCAAAAGGAATGGAGGACTTCTTCGCTGAGGAACTCAGGCTGAGGAGCTCGGAGATGCTGGAGAGTGACGATATGCAAAGGCTGCTGAGGT CATTTGGGGTTGGGAATATGGGAAATGGTGGGTTTGGACATGGTTTGGTTCATCCCAGTGATGCTTGTTACTCTTACAGCATTGGAGGAGGAGGTTATGA GCCTCAGATGGATCAAGCTGCTGCGTATTCTCAGGATCATGGAAGAGGTGGTTCGTCTGGTAAGGCTGTTGTTGGGTGGTTGAAGCTGAAAGCTGCTCTG AGGTGGGGAATTTTCATCAGGAAGAGGGCTGCACAGAGAAGAGCTCAGTTGGTTGAGCTTGATTGA
AA sequence Show only first row Show all	>Lus10019056 pacid=23152661 polypeptide=Lus10019056 locus=Lus10019056.g ID=Lus10019056.BGIv1.0 annot-version=v1.0 MDGFRGRRVDKRGYEQNTEDESDRLPESKKPKMPALASVIVEALKVDSLQRLCSSLEPLFRRIVSEEVERALSRMGNAKLSGRSSPPKLPGPGEKSLQLH FRTRMPPHLFTGARVEGEQGAAIHVVLIDSATGNVVQMGPESSAKLNIVVIEGDFNEEAEEDWTAEHFENYEVKEREGKRPLLTGDLQVILKEGVGTVGD LSFTDNSSWIRSRKFRLGVKVAPGHCEGIRVREAKTESFAVKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLVKSQIVTVEDFLRLLVRDPQKLR SVLGSGMSNRMWENTVEHAKTCVLGGKLYVYYTDGVHSTGVVFNHICELRGLISQGQFVALESLDHNQKLSVDSIVKRAYENWHQVIEYDGKVLTALSAA KVPKKALPPPLPPVDSTSTTNYEPQQFISNKQLYISPEPQCQTIPQPTHLIDFPFVRTDQNTTTTTTTASMSNNHQQAALASNMDYMSVATPGGYNSGGD WTRPKGMEDFFAEELRLRSSEMLESDDMQRLLRSFGVGNMGNGGFGHGLVHPSDACYSYSIGGGGYEPQMDQAAAYSQDHGRGGSSGKAVVGWLKLKAAL RWGIFIRKRAAQRRAQLVELD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24300			Calmodulin-binding protein (.1...		Lus10019056 [exp]	0	1
AT4G31860			Protein phosphatase 2C family ...		Lus10003423 [exp]	1.0	0.9102
AT3G58600			Adaptin ear-binding coat-assoc...		Lus10000617 [exp]	4.7	0.8736
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10042318 [exp]	8.7	0.8927
AT2G02061			Nucleotide-diphospho-sugar tra...		Lus10031330 [exp]	8.9	0.8936
					Lus10033509 [exp]	13.2	0.8834
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015518 [exp]	19.5	0.8669
AT1G80950			Phospholipid/glycerol acyltran...		Lus10003950 [exp]	20.8	0.7946
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10012557 [exp]	22.4	0.8774
AT2G45670			calcineurin B subunit-related ...		Lus10041384 [exp]	22.7	0.8839
AT5G66440			unknown protein		Lus10041775 [exp]	23.0	0.8772

Compare expression of checked genes

Lus10019056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.