Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19810 375 / 1e-125 ChiC class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19820 340 / 3e-112 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19800 320 / 9e-104 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19750 288 / 7e-92 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19720 285 / 1e-90 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19760 280 / 7e-89 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19730 230 / 5e-70 Glycosyl hydrolase superfamily protein (.1) AT4G19770 218 / 2e-66 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G03230 185 / 2e-49 S-locus lectin protein kinase family protein (.1) AT1G61440 181 / 2e-48 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036306 [exp] 530 / 0 AT4G19810 397 / 6e-138 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10036310 [exp] 387 / 1e-131 AT4G19810 277 / 3e-92 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10036313 [exp] 338 / 3e-110 AT4G03230 241 / 9e-71 S-locus lectin protein kinase family protein (.1) Lus10036311 [exp] 328 / 3e-107 AT4G19810 377 / 5e-130 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10036315 [exp] 236 / 8e-72 AT4G19820 253 / 3e-81 Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10040020 [exp] 227 / 7e-70 AT4G23180 246 / 4e-77 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10036314 [exp] 229 / 4e-69 AT4G23180 315 / 6e-102 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10019061 [exp] 230 / 5e-66 AT4G21380 338 / 5e-104 receptor kinase 3 (.1) Lus10018329 [exp] 218 / 1e-64 AT4G19810 268 / 1e-86 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G188300 [exp] 457 / 1e-157 AT4G19810 379 / 2e-130 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.006G188400 [exp] 399 / 5e-135 AT4G19810 477 / 2e-169 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.018G111600 [exp] 262 / 1e-77 AT4G23180 377 / 2e-120 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.018G111751 [exp] 246 / 2e-77 AT4G23290 255 / 2e-81 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.2) Potri.018G111900 [exp] 248 / 3e-72 AT3G16030 367 / 2e-114 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.006G261800 [exp] 232 / 4e-69 AT4G19810 286 / 2e-92 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.006G262001 [exp] 230 / 4e-69 AT4G19810 283 / 2e-92 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.018G112000 [exp] 229 / 5e-69 AT4G19810 284 / 3e-93 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.018G111800 [exp] 237 / 1e-68 AT4G23200 362 / 4e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G112100 [exp] 227 / 3e-68 AT4G19810 279 / 3e-91 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18 CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10019060 pacid=23152674 polypeptide=Lus10019060 locus=Lus10019060.g ID=Lus10019060.BGIv1.0 annot-version=v1.0 ATGGCACCTTCCAAACAACTTATCCCCTTCACCCTCGCCGCCTTCCTCCTCATCCTTATCCACTCCACCGCCGCCCAACCCGCCGTCGTCAGAGGTGGGT ACTGGTTCCCGGAGAGTGGGTTTGCTGTCTCGGCCATCAATTCTAACCATTTCACTCACCTCTTCTGTGCATTCGCCGGCGTTGACCCTGGTACCTTCCA ACTCACCGTCCCAGCCGCGAATCGGCAGCAGTTTATGACCTTTACCCAGACAGTGCAGAGTAAGAACCCGTCGGTTAGAACCCTTTTGTCGATCGGAGGC GGTGGAGCTAACGTCACTATTCTTGCGGCTATGGCGAGCCAGCCCGGTCGAAGGAAGTCTTTCATCGATACTTCCATAAGCACTGCTAGGTCGTTCAATT TCCACGGCCTCGACCTTGATTGGGAGTACCCATCCGACACAACCCAAATGGCCAATTTTGGATCGCTCTTAACCGAATGGCGAGCCGCCGTGGCCGTGGA GGCCCGAAACTCCGGCAAGCCACCTCTACTCCTATCGGCGGCGGTGCTCTATTTGCCGTACTACTACTCTTCCTCTGTTCCTTACCCTGTTCGAACAATC TCAAACTCCTTGGATTGGATCAACTTAATGGACTATGATTTCTTCGCCCCCGGATGGACGCCGACCACAACCGGACCTCCGGCGGCTTTGTTCAACCCCG GCCGTCGTGAGAGCGGCGACAACGGCGTCAGTTCGTGGATCCAAGCCGGGTTGGGGGCGAAGAAAATTGTGCTCGGATTGCCGTTCTACGGATGGTCGTG GCAGCTTAACGACGCCGGTAACCACGGGCTCTATTCCCCGGCGAACGGGAAGGCGTTGCAGGGAGAAGGATCGGCTGGGTACAATCAAATCAACGCATTC ATAGCTCAGAATCGAGCTACGAAAGTATACAACTCGACGGTGGTGTCGGATTACTGTTACAGCGGGAGGACTTGGATTGGATACGACGACGTCCAAAGTG TTTCAACCAAGGTTGCTTATGCGAAGAGGAGAGGTTTGCTTGGTTATTTCGCTTGGCACGTTGGTGCAGATGATAACTGGACTCTCTCATCAAGAGTGGA GCCTCAGAGAGGGAATGCTCAACCAGAAATCACACTAATCGATAAGAAGGTTACAACGATTACAAGATCGACAAAGCTTCAACAGAACCATAATCACAGC AAGAAAGACTACAACAGAGAACAAGCAAGGGAAGAAGAAGCGGAGGGCTTCGACCCTCTTGGGGTACTGCCTCAAGGAGGAGAAGTAGCTGTAAAAAAGC TACAACTAGACTGGGGAAAGAGAGTAGAAATTATAGAAGGGGTCACACAAGGACTTCTTTATCTCCAGAAGTACTCCAGGCTGAGGATTATTCATCGTGA CTTAAAACCCAGCAACATTCTTCTTGATTCTGATATGAGCCCGAAAATCTCAGACTTCGGTTTGGCTAGAATCTTCACGAATGATGTGGAAGAAGCTAAC ACTGAGCGGGTTTTTGCGACATTGTTTATTGTCAACTCTGACAGAGGCTATGCTCCTCCAGAGTATCTGAACGAAGGGCTTTACTCTGGGAAATTGGATG TATTCAGCTTCGGTGTTCTACTCTTGCAAATAATAAGTGGGAAGATGAATGTGGCTGTTTACGGCCAGCAAAAGAATCTGAGTCTTCTGGATTATGCTTA TGAGATGTGGAAAGCTGGGAAAGGAATGGAAGTGATGGATAGCTCATTGGATGACTGTGGATATTCCTGTAATCTGATGACTTGCCTGCAAATTTCTCTA CTCTGCGTCCAAGGAAATCCTGCAGACAGGTTATCTTCATGCTCATGA
AA sequence Show only first row Show all	>Lus10019060 pacid=23152674 polypeptide=Lus10019060 locus=Lus10019060.g ID=Lus10019060.BGIv1.0 annot-version=v1.0 MAPSKQLIPFTLAAFLLILIHSTAAQPAVVRGGYWFPESGFAVSAINSNHFTHLFCAFAGVDPGTFQLTVPAANRQQFMTFTQTVQSKNPSVRTLLSIGG GGANVTILAAMASQPGRRKSFIDTSISTARSFNFHGLDLDWEYPSDTTQMANFGSLLTEWRAAVAVEARNSGKPPLLLSAAVLYLPYYYSSSVPYPVRTI SNSLDWINLMDYDFFAPGWTPTTTGPPAALFNPGRRESGDNGVSSWIQAGLGAKKIVLGLPFYGWSWQLNDAGNHGLYSPANGKALQGEGSAGYNQINAF IAQNRATKVYNSTVVSDYCYSGRTWIGYDDVQSVSTKVAYAKRRGLLGYFAWHVGADDNWTLSSRVEPQRGNAQPEITLIDKKVTTITRSTKLQQNHNHS KKDYNREQAREEEAEGFDPLGVLPQGGEVAVKKLQLDWGKRVEIIEGVTQGLLYLQKYSRLRIIHRDLKPSNILLDSDMSPKISDFGLARIFTNDVEEAN TERVFATLFIVNSDRGYAPPEYLNEGLYSGKLDVFSFGVLLLQIISGKMNVAVYGQQKNLSLLDYAYEMWKAGKGMEVMDSSLDDCGYSCNLMTCLQISL LCVQGNPADRLSSCS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10019060 [exp]	0	1
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Lus10004223 [exp]	1.4	0.9890
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10022762 [exp]	4.7	0.9900
AT1G80450			VQ motif-containing protein (....		Lus10026247 [exp]	4.9	0.9864
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10000193 [exp]	6.2	0.9832
AT4G01575			serine protease inhibitor, Kaz...		Lus10030164 [exp]	8.0	0.9782
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10028377 [exp]	9.2	0.9875
AT1G47670			Transmembrane amino acid trans...		Lus10022641 [exp]	10.5	0.9844
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041830 [exp]	11.3	0.9849
AT1G35210			unknown protein		Lus10010343 [exp]	12.4	0.9854
AT4G37290			unknown protein		Lus10019310 [exp]	15.3	0.9851

Compare expression of checked genes

Lus10019060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.