Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21380 340 / 1e-104 ARK3 receptor kinase 3 (.1) AT3G16030 338 / 1e-103 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT4G11530 332 / 3e-103 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G23270 331 / 3e-103 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G23280 325 / 6e-101 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT1G65790 329 / 2e-100 ARK1 receptor kinase 1 (.1) AT1G65800 329 / 2e-100 ARK2 receptor kinase 2 (.1) AT4G03230 332 / 4e-100 S-locus lectin protein kinase family protein (.1) AT4G23290 321 / 4e-100 CRK21 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.2) AT1G61440 327 / 5e-100 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041639 [exp] 562 / 0 AT4G11900 338 / 7e-104 S-locus lectin protein kinase family protein (.1) Lus10024081 [exp] 561 / 0 AT1G61500 333 / 5e-102 S-locus lectin protein kinase family protein (.1) Lus10040021 [exp] 445 / 7e-149 AT4G19810 278 / 5e-89 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10040020 [exp] 402 / 3e-136 AT4G23180 246 / 4e-77 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10036314 [exp] 376 / 3e-124 AT4G23180 315 / 6e-102 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10033752 [exp] 338 / 2e-109 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 337 / 3e-103 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10023391 [exp] 344 / 4e-103 AT1G11300 520 / 5e-168 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10020083 [exp] 322 / 6e-103 AT4G21390 427 / 6e-143 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G111900 [exp] 853 / 0 AT3G16030 367 / 2e-114 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.018G111700 [exp] 804 / 0 AT4G23200 363 / 1e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111800 [exp] 795 / 0 AT4G23200 362 / 4e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111600 [exp] 712 / 0 AT4G23180 377 / 2e-120 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.001G437950 [exp] 338 / 2e-109 AT4G21390 406 / 5e-135 S-locus lectin protein kinase family protein (.1) Potri.011G125301 [exp] 350 / 2e-108 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027400 [exp] 348 / 7e-108 AT1G11330 872 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.004G023550 [exp] 343 / 9e-108 AT4G05200 541 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G125000 [exp] 347 / 2e-107 AT4G27290 790 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G025200 [exp] 343 / 2e-107 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18 CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10019061 pacid=23152664 polypeptide=Lus10019061 locus=Lus10019061.g ID=Lus10019061.BGIv1.0 annot-version=v1.0 ATGGCAGCTGCCGGAAACTCATTTGTTCTTCTGCATCTCTCCTTCTTCTTCTTCTTCCTCTCGTCCTTCCAGTTTCACTACTCAACAGCCGGCCAGCAGA AATGGATCAAATCCGCCTATTGGGACTCCATCAGCAACTTCCCCATTACCGAACTCAACTCCGCTCTCTTCACTCACCTCATCTGCGCCTTCGCCGCCGT AAACTCCTCAACTTTCCACCTGTCCATCCCTCCCACTTCCCTCCCTGACTTCTCCACCTTCACCGCCACCGTCCGCCGCCAGAACCCCGACGTCACCACC CTCCTCTCCGTCCGGAACGGCGACCTGCCCTTTTCCGCCATGACCTCCACTCTTTCCCGCCGGAGCACCTTCATCCGATCATCAATCCAAACCGCCAGAC TCCACGGCTTCCAAGGAATCGATTTGTTGACCCACGGTACGGACGATGGGAAGATAGAAACCCTAATTGAGGAATTCAGATCTGCGATCGATTCGGAAGC CCAGAAATCGAACAATTCGAAGCTCTTACTTACCATGGCGGTTCCAAGATCTCCGAACCTGAATTCCGCCGGGTATCCAGTTCGATCCATGGCGACAAAT CTGGATTGGACGAACCTGTTGGCCTTCGATTACCACTTGCCGACGAAGGAGAACTTCACGGCGAACCACGCCGCGTTATTCGGCGATGATGATGGCGGCT CGACCGATTCGGGAATCAAGGAGTGGATTCGGATCGGGTTTCCGGCGAAGAAGCTGGTTTTGGGACTGCCGTACCACGGGTACGCGTGGAAGCTGGTGGA TCCGAGGAACAACTCGCTTGGAGCTCCGGCGAATGGGCCGGAGATGACGATCGCCGGGGACATGGGATATAAACTGGTGAAATCTACGGTTGAGGGGTAT GGGTATGGAGCTGGAGTGGTGTATGATTCGAGGTACGTAGTAAATTACTTTGTTGTGGGTAAGACTTGGATCAATTTCGACGGCGTGGAGGCTGTGACTG CCAAAGTTTCTTACGCCGTGAAAACGGGACTGCTGGGTTTCGTTGCGTTCCAGTTGGGCAATGACGATAACTGGGAGCTCTCTCGTGCAGCTCAGTTGAT GGAGATGGAGAAAAGTGAAAACAAGAAGTGGAAGCTGCTGGTGCTAGAAACCTCAGTCCCAATTGCTGCCATCATTCTTCTGTCCACCATAGGTCTCTGC TACATACGAAGGAAGAGTGCATTGAAGAAGCAGAAAGAAAAGCTGTCCCAATCACAATTTGGGAGCTCAGGTCGTCCTAATCTGCGAGCTTTCAGCTTCT CTGACATCAAATCAGCTACCAACAACTTCTCCAGCGAGAACTTGCTCGGATCTGGCGGTTATGGTCCTGTCTACAAGGGTGTTTTGAGAGGAGGTGAAGT AATAGCAGTGAAGAGGCTTTCAGAATCATCAAATCAGGGAGTGGTGGAGTTTAGGAACGAGGTTTCACTCACAGCCAGGCTCCAGCATGTGAATCTGGTG AGGGTGTTGGGGTATTGCACTGAGAATGAAGAGAAAATGCTGGTTTACGAGCTCATGCCCAACAAAAGCTTGCATCTCTATCTGTTTGATCCAGTGAGGC GGTTAAGGTTGGACTGGAACAAGAGAGTTTGCATCATTGAAGGAGTAACGCAAGGACTATTGTACCTTCAAGAGTACTCCAACTTCACCATAATCCACAG GGATATCAAGGCCGGTAACATTTTGCTGGATGATTCCATGAATCCCAAGATTTCAGATTTCGGGATGGCTAGGCTCTTCAGGAAAGATCTCGATGAAGCC AACACTCGCAATATTGTTGGAACATATGGATATATCCCTCCTGAATACGCTAAGAAAGGGATATATTCGATGAAATACGACGTCTACAGCTTTGGAGTCT TGCTTCTCCAGATCATCAGTGGCAAAAGGAACCAACTCCGCTACGGCCCAAACCAAGATCTCCATCTCCTAGAACATGCTTACGAATGTTGGAGAAATGG GAAAGGAACGGAATTCTTCGATGCATCACTGGATGATTCGTCGTCGCAATGTAAGCTGATGACATGTTTGCAAGTTGCTTTATTGTGTGTTCAGGAAAAA CCTGACGACAGGCCGACAATGTTGCAAGTTTTGAATATGCTGAGAGGTGCTCTGGGATTGACTACGCCGAAAAGGCCTGCTTTCTCAGTGAGGGAGGAAA ATAAGGTGGAGACAAATTGCACAAGGCAGCAACAACAAGACCAAGTTTGGTCTTTTAATGTTGATGATCTCTCTCAAGTCGAAGCTCGAACTTAG
AA sequence Show only first row Show all	>Lus10019061 pacid=23152664 polypeptide=Lus10019061 locus=Lus10019061.g ID=Lus10019061.BGIv1.0 annot-version=v1.0 MAAAGNSFVLLHLSFFFFFLSSFQFHYSTAGQQKWIKSAYWDSISNFPITELNSALFTHLICAFAAVNSSTFHLSIPPTSLPDFSTFTATVRRQNPDVTT LLSVRNGDLPFSAMTSTLSRRSTFIRSSIQTARLHGFQGIDLLTHGTDDGKIETLIEEFRSAIDSEAQKSNNSKLLLTMAVPRSPNLNSAGYPVRSMATN LDWTNLLAFDYHLPTKENFTANHAALFGDDDGGSTDSGIKEWIRIGFPAKKLVLGLPYHGYAWKLVDPRNNSLGAPANGPEMTIAGDMGYKLVKSTVEGY GYGAGVVYDSRYVVNYFVVGKTWINFDGVEAVTAKVSYAVKTGLLGFVAFQLGNDDNWELSRAAQLMEMEKSENKKWKLLVLETSVPIAAIILLSTIGLC YIRRKSALKKQKEKLSQSQFGSSGRPNLRAFSFSDIKSATNNFSSENLLGSGGYGPVYKGVLRGGEVIAVKRLSESSNQGVVEFRNEVSLTARLQHVNLV RVLGYCTENEEKMLVYELMPNKSLHLYLFDPVRRLRLDWNKRVCIIEGVTQGLLYLQEYSNFTIIHRDIKAGNILLDDSMNPKISDFGMARLFRKDLDEA NTRNIVGTYGYIPPEYAKKGIYSMKYDVYSFGVLLLQIISGKRNQLRYGPNQDLHLLEHAYECWRNGKGTEFFDASLDDSSSQCKLMTCLQVALLCVQEK PDDRPTMLQVLNMLRGALGLTTPKRPAFSVREENKVETNCTRQQQQDQVWSFNVDDLSQVEART

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10019061 [exp]	0	1
AT3G48860			unknown protein		Lus10016721 [exp]	5.2	0.8893
AT5G57580			Calmodulin-binding protein (.1...		Lus10001436 [exp]	10.3	0.8957
AT4G39370		UBP27	ubiquitin-specific protease 27...		Lus10033528 [exp]	11.7	0.8889
AT5G24870			RING/U-box superfamily protein...		Lus10026941 [exp]	11.9	0.8970
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10041126 [exp]	13.9	0.8852
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10009890 [exp]	17.5	0.8693
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10003119 [exp]	20.8	0.8796
AT1G34320			Protein of unknown function (D...		Lus10017136 [exp]	33.5	0.8730
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10010761 [exp]	36.3	0.8805
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10041088 [exp]	38.3	0.8842

Compare expression of checked genes

Lus10019061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.