Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42640 268 / 3e-84 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT2G07560 264 / 9e-83 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT4G30190 257 / 3e-80 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT1G80660 253 / 1e-78 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT2G18960 253 / 1e-78 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT2G24520 244 / 1e-75 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT5G62670 234 / 1e-71 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT5G57350 233 / 2e-71 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT3G47950 229 / 8e-70 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT3G60330 214 / 3e-64 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019593 [exp] 292 / 1e-93 AT3G42640 1455 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Lus10040018 [exp] 288 / 2e-92 AT3G42640 1333 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Lus10007948 [exp] 247 / 4e-79 AT4G30190 998 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10001437 [exp] 248 / 3e-77 AT4G30190 1314 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10002326 [exp] 242 / 3e-77 AT1G80660 1011 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10013483 [exp] 248 / 5e-77 AT4G30190 897 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10001631 [exp] 246 / 6e-76 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10026093 [exp] 243 / 8e-76 AT1G80660 912 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10024105 [exp] 245 / 1e-75 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G005900 [exp] 266 / 2e-83 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G188600 [exp] 264 / 1e-82 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.018G112400 [exp] 262 / 6e-82 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G275000 [exp] 254 / 3e-79 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.018G006000 [exp] 250 / 2e-77 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.018G090300 [exp] 249 / 2e-77 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.006G165900 [exp] 249 / 2e-77 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.003G179800 [exp] 233 / 1e-71 AT1G80660 1463 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Potri.015G066000 [exp] 231 / 9e-71 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.012G071600 [exp] 226 / 6e-69 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019063 pacid=23152653 polypeptide=Lus10019063 locus=Lus10019063.g ID=Lus10019063.BGIv1.0 annot-version=v1.0 ATGGTCTTGATCATCGCAATCCTCAACGACGGAACCATTATGACAATTTCTAAAGACAGGGTGAAGCCATCTCCTGTACCTGATTCATGGAAACTCAACG AGATCCTTGCGACAAGAATTGTTCTTGGTGCTTATATGGCCTTAGTGACTGTCTTTTTCTTCTGGCTTGCCCAGGAAACTGATTTCTTCTCTAATATATT TGGGGTGAGATCAATTAAAGGGAAACATGAAGAGCTTACAGCTGCACTTTACCTGCAAGTGAGCATCATTAGTCAAGCACTGAGATTCGTCACCAGATCA AGAGGATGGTCAATATCCTACGTGGAACGCCCTGGAATCTTGCTAGTAGTTGCCTTCCTGATAGCCCAATTGCTTGCAACTGTAATTGCCGTATATGCAA AGTGGGATTTCGCCAAGATTGAAGGAATTGGGTGGGGATGGGCTGGAGTCATTTGGGTCTTCAGTATTGTCACTTACATTCCGCTCGATACTACGATGAA GAAAGACTTCGGAAAGGGAGAGAGGGAAGCTCAGTGGGCAGAAGCTCAAAGGACCTTCCATGGATTGAAAAAGAAGGAGGATTCTAGCGTTGCTGGTGGA GATATGAATCACTACAGTGACACTATGTAG
AA sequence Show only first row Show all	>Lus10019063 pacid=23152653 polypeptide=Lus10019063 locus=Lus10019063.g ID=Lus10019063.BGIv1.0 annot-version=v1.0 MVLIIAILNDGTIMTISKDRVKPSPVPDSWKLNEILATRIVLGAYMALVTVFFFWLAQETDFFSNIFGVRSIKGKHEELTAALYLQVSIISQALRFVTRS RGWSISYVERPGILLVVAFLIAQLLATVIAVYAKWDFAKIEGIGWGWAGVIWVFSIVTYIPLDTTMKKDFGKGEREAQWAEAQRTFHGLKKKEDSSVAGG DMNHYSDTM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Lus10019063 [exp]	0	1
					Lus10022169 [exp]	4.7	0.7156
					Lus10013529 [exp]	13.9	0.6215
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10027216 [exp]	15.1	0.6080
					Lus10024677 [exp]	16.7	0.6112
AT2G43590			Chitinase family protein (.1)		Lus10035618 [exp]	17.7	0.5939
					Lus10028048 [exp]	27.7	0.5846
					Lus10023352 [exp]	29.0	0.5846
AT5G67440		MEL2, NPY3	NAKED PINS IN YUC MUTANTS 3, M...		Lus10025193 [exp]	30.2	0.5846
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10008888 [exp]	31.3	0.5846
					Lus10009177 [exp]	32.4	0.5846

Compare expression of checked genes

Lus10019063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.