Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42640 302 / 5e-96 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT2G07560 299 / 7e-95 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT1G80660 298 / 2e-94 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT3G47950 290 / 2e-91 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT2G24520 288 / 7e-91 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT5G62670 285 / 2e-89 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT5G57350 283 / 1e-88 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT4G30190 276 / 3e-86 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT2G18960 275 / 1e-85 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT1G17260 273 / 5e-85 AHA10 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019593 [exp] 354 / 4e-116 AT3G42640 1455 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Lus10040018 [exp] 352 / 8e-116 AT3G42640 1333 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Lus10024105 [exp] 307 / 7e-98 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10026944 [exp] 299 / 3e-97 AT2G24520 1128 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10026946 [exp] 298 / 4e-94 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10001631 [exp] 289 / 7e-91 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10042183 [exp] 285 / 2e-89 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10003259 [exp] 285 / 2e-89 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10028201 [exp] 276 / 1e-86 AT3G60330 1422 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G188600 [exp] 310 / 4e-99 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G005900 [exp] 302 / 6e-96 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.018G112400 [exp] 302 / 6e-96 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.003G179800 [exp] 297 / 1e-94 AT1G80660 1463 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Potri.006G275000 [exp] 298 / 2e-94 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.018G006000 [exp] 297 / 5e-94 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.001G048300 [exp] 290 / 1e-92 AT2G07560 1193 / 0.0 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) Potri.018G090300 [exp] 287 / 3e-90 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.006G165900 [exp] 286 / 6e-90 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.012G071600 [exp] 286 / 7e-90 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019064 pacid=23152660 polypeptide=Lus10019064 locus=Lus10019064.g ID=Lus10019064.BGIv1.0 annot-version=v1.0 ATGTGGAATCCCCTGTCATGGGTTATGGAGTGTGCAGCTATTATGACAATCGTCTTAGCAAATGGAGGAGGCAAGCCTCCGGATTGGCAGGATTTCCTAG GCATTGTTGTGTTGTTGATCATCAATTCTACTATTAGTTTTATTGAGGAGAACAGTGCCGGTAATGCTGCTGCTGCTTTGATGGCCAATCTTGCTCCACA AGCTAAGGTGTTCCAAGAGGGAATGGATTCTGACCACCTGCTCTTACTTGCCGCTAGAGCTTCTAGAGTTGAAAATCAGGATGCCATTGATGCTTGCATT GTTGGAATGTTGAGCGATCCCAAACAAGCAAGAGCAGGGATCAACGAGGTTCATTTCTTACCATTCAATCCTGTCGAAAAGCGTACCACAATTAATTACC ATGGCAACAATGGTGAATGGCACAGAGCTAGCAAAGGTGCACCTGAGCAAATCATTGAATTTTGTGATCTTAGAGGGGAAATCAATAAAAAAGCTCACAA GATCATTGCAGACTTTGCTGATCGCAGCCTTCGTTCTTTAAGTGTTGCTTATCAGACGGTTCCAGAGAAGAACAAGGATAGTGAAGGACCACGTGTTAAG ATGATCACTGGCTACCAACTTGCCATCGGGAAAGAAACTGGTCGCCGCCTTGGCATGGGCACAAATCTGTACCCTTCATCTGCCATCCTCAGCGAGAACA ACGAAACTTCCATGACTATTGATGAGCTCATCGAAACAGCCGATGGGTTTTCCGGAGTCTTTCCTGAGCACAAGTACGAGATAGTCAAGAGGCTCCAGGG AAAAAACCACATTTGCGGAATGACCGGAGACGGGTGTCAATGA
AA sequence Show only first row Show all	>Lus10019064 pacid=23152660 polypeptide=Lus10019064 locus=Lus10019064.g ID=Lus10019064.BGIv1.0 annot-version=v1.0 MWNPLSWVMECAAIMTIVLANGGGKPPDWQDFLGIVVLLIINSTISFIEENSAGNAAAALMANLAPQAKVFQEGMDSDHLLLLAARASRVENQDAIDACI VGMLSDPKQARAGINEVHFLPFNPVEKRTTINYHGNNGEWHRASKGAPEQIIEFCDLRGEINKKAHKIIADFADRSLRSLSVAYQTVPEKNKDSEGPRVK MITGYQLAIGKETGRRLGMGTNLYPSSAILSENNETSMTIDELIETADGFSGVFPEHKYEIVKRLQGKNHICGMTGDGCQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Lus10019064 [exp]	0	1
					Lus10005608 [exp]	4.0	0.8263
					Lus10019580 [exp]	5.7	0.8039
					Lus10003636 [exp]	5.7	0.8304
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10032324 [exp]	6.0	0.8097
AT1G70890		MLP43	MLP-like protein 43 (.1)		Lus10012467 [exp]	10.4	0.8207
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016224 [exp]	11.6	0.8146
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10024050 [exp]	12.3	0.8179
AT4G20820			FAD-binding Berberine family p...		Lus10023376 [exp]	16.9	0.8073
AT1G60830			RNA-binding (RRM/RBD/RNP motif...		Lus10011201 [exp]	17.5	0.7354
AT1G29460			SAUR-like auxin-responsive pro...		Lus10020430 [exp]	19.2	0.8005

Compare expression of checked genes

Lus10019064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.