Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51350 936 / 0 MORE LATERAL GROWTH1 (MOL1) MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G61480 602 / 0 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT1G08590 501 / 1e-161 Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 493 / 1e-158 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G49670 474 / 1e-151 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 468 / 2e-149 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G75820 466 / 1e-148 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 453 / 8e-144 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT2G25790 415 / 1e-129 Leucine-rich receptor-like protein kinase family protein (.1) AT5G56040 399 / 1e-122 Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036321 [exp] 1737 / 0 AT5G51350 957 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10027221 [exp] 608 / 0 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10038930 [exp] 603 / 0 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10000814 [exp] 537 / 1e-175 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027951 [exp] 526 / 2e-171 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025943 [exp] 501 / 3e-162 AT4G28650 1284 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10013562 [exp] 473 / 4e-151 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10017267 [exp] 469 / 7e-150 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10039641 [exp] 466 / 5e-148 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G189000 [exp] 1278 / 0 AT5G51350 1058 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.018G113000 [exp] 1275 / 0 AT5G51350 1014 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.001G126100 [exp] 633 / 0 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.003G107600 [exp] 630 / 0 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.019G021700 [exp] 540 / 1e-176 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G048800 [exp] 530 / 5e-173 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G256500 [exp] 526 / 3e-171 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.005G241500 [exp] 512 / 1e-166 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G019900 [exp] 506 / 4e-164 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G073600 [exp] 488 / 4e-157 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019067 pacid=23152700 polypeptide=Lus10019067 locus=Lus10019067.g ID=Lus10019067.BGIv1.0 annot-version=v1.0 ATGGAGATCTTACGCTGTCTCTACTTGAAGCTGTTCTTGACTTCCTTGTTCATCACCGCGGCTCTGGGTAGTATTGATCCTTATTCTAAAGCGCTTCTGA GCTTAAAATCTGAGTTCGTAGGCCATGATGGCAGTCTGAATGATTGGTTAGAGCCTTCTGATGGAGGAAACCCAGCTGAAGAGATATATGCATGCTCATG GTCAGGAGTGAAATGTAACGATAACTCAACAAAGGTTGAAGCTTTGGACCTGTCTTTCAAGAATCTTAGAGGTGCATTGTCGGGGAATCAGTTCAGTGTC TTCACCGAGCTGGTGGATCTCAACCTCAGTTACAACAAGTTTTCCGGGCAGCTTCCCGCTGGGATTTTCAACCTGACCAAGCTACAAAGTTTGGATATTA GCAGGAACAATCTTTCTGATGAATTCCCAAAGGGGGTTTTCCGTCTACAGAATCTGGTTGTGCTTGATGCCTTCAGCAACAGCTTCTCTGGGCCGCTGCC TGCTGAACTTTCCCAGCTTGAACATCTCAAAGTCTTGAATCTAGCTGGAAGTTACTTCAGTGGACCGATTCCATCAGAGTATGGTTCCTTCAAGAGCCTC GAGTTTATTCACCTGGCTGGCAACAACCTCGGCGGTAACATACCACCTGAGCTCGGGAAGCTTAAGACGGTGACGCATATGGAGATCGGCTATAATTCTT ACCAGGGCAGTATTCCGTGGCAATTGGGTAATATGAGTGAGCTCCAATATCTGGACATAGCTGGGGCCAACATATCTGGTCCGATTCCAAGTGAATTCTC CAATCTCACTAAGCTTCATTCATTGTTCCTCTTCAGAAACCAGCTCAATGGGCTGATTCCATGGGAGTTCAGCAGAATCGTGCCTCTGGCAAGCCTAGAT CTTTCTGTCAACCAACTCTCGGGACCCATACCTGAGAGTTTTGCTGAGTTGAAGAATCTAAGGCTGCTTAGTCTCATGTACAATGAACTGAATGGGACGA TCCCTGAAGGTGTTGCAAAGCTTCCTTCATTGGAAACTCTCCTTGTATGGAACAATTTCTTCTCAGGATGGCTTCCAGAGAACTTGGGCATGAACTCAAA GCTCCAATGGGTGGATGTTTCCACCAACAATTTCACAGGTAGCATTCCGCCGGGCATTTGTTCAGGAGGTTCTCTAGTCAAGTTGATCCTTTTTTCAAAC AAATTCACTGGAAGTCTCGAGCCATCAATCTCAAACTGCTCTTCCCTTGTGCGACTAAGACTAGAAGACAATTCCTTCTCGGGCGAAATCCCTGTGACGT TCAGCCATCTTCCAGAGATCACATACGTAGATCTGTCACGAAACAATTTCAAAGGCGGAATTCCCAATGACATTTCTCACGCTCCTAAGCTTCAGTACTT TAATATTACAGATAACCCAGTTCTTGGAGGTAATTTACCTGCGGATATATGGTCGTCACCAGTGCTCCAAAACTTCTCTGCCTCAGCTTGTAACGTCTCA GGGAATCTTACCGGATTCCAATCCTGCAAATCCATTTCTTTCATTGAGCTAAGCATGAACAACCTTGAAGGAAGCATCCCTGTAAGCGTTTCTAACTGTC GAGCACTTGTAAAGATGAACATAGCCAATAACAAGTTCTCTGGCACCATTCCTGATGAGTTTGCAGATCTTCCATCCTTAGCTGGGTTGGACCTATCAAA TAATAATTTTACTGGGAAAATACCAGAAAAGCTTGGCGATTCTTCAAGCTTAGTACTTTTAAATGTATCCTTCAACGATATATCTGGTTCCATTCCTTCT ACCACTATGTTTAAAGCAATGGGTACCAGCGCATATGCTGGAAATCCGAAACTATGTGGAACACCTCTCCAGCCATGCGCAGCTTCAATGACTATATTCC ACGGCAAAGGCACAAGGAAGGTCGCATGGGCATTGCTATTGTCTGCAGCTGTGGTTGTATTAGTGCTGGCCTCGGCGTTGGGAATAATGTACATCCGCAG ACAAGGGAAAGGCGAATGGAAAATGATATCCTTTGGTGGACTCCCCCAATTCACTGCAAGCGATGTTCTGAAGAGCTATGGAGCTACAGAATCAATCAAG CCAGTGCCTCCTTTGTCAGCCACTGTTTGGCAAGCAAATCTTCCCACAGGAATAACAGTTTCAGTGAAAAGGGTTGAGCTGGAGGCAAAGACAATGAAAG TCAGCATGGAGTTCATAGTGCGAATTGGAAACGTGAGACACAAAAATCTGACTAGATTGCTTGGGGTTTGCCATAACAAGCATCTAGCTTACCTTTTGTA TGATTACTTCCCGAATGGAACTTTGACCGAGAAGATAACCACTAAGAGTCATTGGGCAACCAAGTTGAAACTTATAATTGGGATTGCCAGAGGACTCTGC TTTCTTCATCATGATTGCTACCCTGCGATTCCCCATGGAGATCTGAGCTCAAGCAACATCGTCTTTGAGGAAAACATGGAACCACGTTTAGTACGATTCG GATTGAAGTACCTGGAAGAAATTGGTTGTGGCATGTATACAACAATACTTTCCGGTAAAGAGACAGGTGAATTCAATGGCCCCTTAAAGGACGAGCTCTG CAATGATATATACAGCTTTGGGGAGATTATCTTGGAGATCTTGAGTAATGGTAGACTGACTAAAGCTGGAAGCTGTACGCAGAACAAGCCCATGGAAGTG CTATTGAAAGAAATGTACAGTGTGAATGAATCTGTAACTTTGGATTCAACTAAAAGGGAGATAAAACAAGCTCTTGAAGTTGCTTTGCTCTGCACCAGAA GCAGATCATCTGATAGGCCAACCATGGCAGACGCGCTGAAGCTTTTATCAGCTTCGATCCCACATAGCAAATGA
AA sequence Show only first row Show all	>Lus10019067 pacid=23152700 polypeptide=Lus10019067 locus=Lus10019067.g ID=Lus10019067.BGIv1.0 annot-version=v1.0 MEILRCLYLKLFLTSLFITAALGSIDPYSKALLSLKSEFVGHDGSLNDWLEPSDGGNPAEEIYACSWSGVKCNDNSTKVEALDLSFKNLRGALSGNQFSV FTELVDLNLSYNKFSGQLPAGIFNLTKLQSLDISRNNLSDEFPKGVFRLQNLVVLDAFSNSFSGPLPAELSQLEHLKVLNLAGSYFSGPIPSEYGSFKSL EFIHLAGNNLGGNIPPELGKLKTVTHMEIGYNSYQGSIPWQLGNMSELQYLDIAGANISGPIPSEFSNLTKLHSLFLFRNQLNGLIPWEFSRIVPLASLD LSVNQLSGPIPESFAELKNLRLLSLMYNELNGTIPEGVAKLPSLETLLVWNNFFSGWLPENLGMNSKLQWVDVSTNNFTGSIPPGICSGGSLVKLILFSN KFTGSLEPSISNCSSLVRLRLEDNSFSGEIPVTFSHLPEITYVDLSRNNFKGGIPNDISHAPKLQYFNITDNPVLGGNLPADIWSSPVLQNFSASACNVS GNLTGFQSCKSISFIELSMNNLEGSIPVSVSNCRALVKMNIANNKFSGTIPDEFADLPSLAGLDLSNNNFTGKIPEKLGDSSSLVLLNVSFNDISGSIPS TTMFKAMGTSAYAGNPKLCGTPLQPCAASMTIFHGKGTRKVAWALLLSAAVVVLVLASALGIMYIRRQGKGEWKMISFGGLPQFTASDVLKSYGATESIK PVPPLSATVWQANLPTGITVSVKRVELEAKTMKVSMEFIVRIGNVRHKNLTRLLGVCHNKHLAYLLYDYFPNGTLTEKITTKSHWATKLKLIIGIARGLC FLHHDCYPAIPHGDLSSSNIVFEENMEPRLVRFGLKYLEEIGCGMYTTILSGKETGEFNGPLKDELCNDIYSFGEIILEILSNGRLTKAGSCTQNKPMEV LLKEMYSVNESVTLDSTKREIKQALEVALLCTRSRSSDRPTMADALKLLSASIPHSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51350		MORE LATERAL GR...	MORE LATERAL GROWTH1, Leucine-...		Lus10019067 [exp]	0	1
AT5G51350		MORE LATERAL GR...	MORE LATERAL GROWTH1, Leucine-...		Lus10036321 [exp]	1.0	0.9289
AT5G36930			Disease resistance protein (TI...		Lus10033953 [exp]	9.7	0.8597
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000548 [exp]	10.5	0.8472
AT2G27090			Protein of unknown function (D...		Lus10025550 [exp]	12.2	0.7736
AT5G36930			Disease resistance protein (TI...		Lus10007813 [exp]	14.3	0.8381
AT1G70870			Polyketide cyclase/dehydrase a...		Lus10039893 [exp]	17.2	0.7492
AT3G30841			Cofactor-independent phosphogl...		Lus10034089 [exp]	17.7	0.8115
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10020750 [exp]	18.7	0.7874
AT5G36930			Disease resistance protein (TI...		Lus10007790 [exp]	19.6	0.8470
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Lus10028234 [exp]	21.2	0.8466

Compare expression of checked genes

Lus10019067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.