Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35180 587 / 0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT4G19040 239 / 4e-70 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT5G45560 228 / 3e-66 Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (.1) AT2G28320 207 / 2e-58 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) AT1G06050 190 / 1e-55 Protein of unknown function (DUF1336) (.1) AT5G10750 181 / 2e-52 Protein of unknown function (DUF1336) (.1) AT3G54800 188 / 1e-51 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) AT5G25010 165 / 1e-46 Protein of unknown function (DUF1336) (.1) AT5G24990 161 / 4e-45 Protein of unknown function (DUF1336) (.1) AT5G25020 125 / 3e-32 Protein of unknown function (DUF1336) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040015 [exp] 687 / 0 AT5G35180 1034 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019591 [exp] 661 / 0 AT5G35180 931 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10040011 [exp] 455 / 2e-152 AT5G35180 820 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019585 [exp] 413 / 2e-136 AT5G35180 744 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10012149 [exp] 225 / 5e-65 AT4G19040 1227 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10007596 [exp] 216 / 1e-61 AT4G19040 1217 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10021465 [exp] 215 / 4e-61 AT2G28320 1056 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10016094 [exp] 205 / 2e-57 AT2G28320 979 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10008154 [exp] 188 / 4e-55 AT1G06050 362 / 5e-126 Protein of unknown function (DUF1336) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G113100 [exp] 633 / 0 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Potri.003G100600 [exp] 223 / 5e-64 AT4G19040 1182 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.008G213000 [exp] 212 / 4e-60 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.001G132900 [exp] 208 / 1e-58 AT4G19040 1159 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.010G223400 [exp] 207 / 2e-58 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.009G011200 [exp] 204 / 5e-57 AT2G28320 1071 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Potri.008G038800 [exp] 201 / 3e-56 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.007G130400 [exp] 177 / 1e-50 AT1G06050 390 / 1e-136 Protein of unknown function (DUF1336) (.1) Potri.017G027700 [exp] 176 / 2e-50 AT1G06050 399 / 4e-140 Protein of unknown function (DUF1336) (.1) Potri.018G014234 [exp] 169 / 1e-47 AT5G10750 428 / 5e-152 Protein of unknown function (DUF1336) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [flax] [poplar] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Lus10019068 pacid=23152697 polypeptide=Lus10019068 locus=Lus10019068.g ID=Lus10019068.BGIv1.0 annot-version=v1.0 ATGGAGGGGCCGGCCATCACGGAGACAGAGGTGACGGTGAGGAAGGTGCGAGGAGTGAGCATTGGATCGGAGAAGGAGATGTTCGATGGCGCCAGCAGCA GCGTAAGTGGAAGCAGTGGAAAGGGCGAGGATAAAGGTGCTTTCGAATATTTCGGCTGGATTTATCATTTGGGCACCAATACGATTGGCCACGATTACTG CCATTTGAGGTTCTTGTTCATCAGAGGCAAATATGTGGAGATGTACAAGCGCGATCCTCACGAGAATCCTGGCATTAGTGATAAGGGTACTCTCGTGAAA GCAGTGGGTGTTGTTGATGCGAGTGCTGATACTGTTTTTGAGGTGTTCTTAAACCTTGATCAACAACAAAGATACGAGTGGAAATCCAATAGAGATTTTG TCTTCTCGAGGCAATGGTTCCGTGGACAAGATGGAACATACACTTCCAGTTGGGAGATAAGGAATTTGAGTCCGTCAACTGGTTCTAACACAGCAAGATG TCTAGTGAGCCAAATGCTAGAGATGAATCAAGTTGGTTGGTGTAGATGGAAACAGAATCGGCGCAGCGATTTTGAAAAAACTGCTCCTTATGCTATGTTG ACACAGGTGGCAGGTTTGAAAGAATATATCGGAGCGAGTCCCGCCTTGAGAGTTGAATCTTCCACAACAGTTGTTCGCTCAAAAAGCTTGATGGGCTCCA TTGACTTCGATGCCGCAGAAGTCAATGATGAGTTTTATGATGCAACTGATGGAGAATCATCATCGGATGAAGAGGAAGGTGATAGTGATGGTTCACATGC TAACAAGAATGGTAGGGTGAAACTAAAAAATGTTTCATGGGCCATTGCCGGTTTAGCATCGAAGAAAACTTCAGCTCCAGATGCAAATGACACTTTAGAT CCTAATGTGCCTCCAATTAGTATAGAATCAAATGAATTCAATGGCTCCCTTCACAAAGGAAAGGATGAAAAGGATTCAAACTGTTGGACTTCTCCAGATG GATCAGGATTTAAGATCAGAGGAAGAACTTATCTCAAAGACAACTCTAAGGTGGTTGGTGGAGATCCCCTTCTAGAGCTCATAGCAGTTGATTGGTTCAA AGTCGATAGAGCTGTAGATGGGGTTGCACAGCATCCCGAGTGCCTATTACAGACAGCAGCTGGCAAGAAGCTTCCTTTTGTTCTGGTTATTAACCTACAG GTTCAGATTTCTCAAAGCGATACTAAGTTGAAGTCAATCCTTCTATTCCAGATTCCAGCAAAACCCAACTATAGTTTGGTACTCTACTATGCAGCAGATA GACCTGTAAACAAAGAATCGTTGTTGGGGAAATTTATTGACGGAACAGACATGTTTCGAGATTCAAGATTCAAGTTGATTCCCAGTATCGTTGAGGGATA CTGGATGGTCAAACGTGCTGTTGGTACAAAAGCTTGCCTATTGGGCAAAGCTGTAACTTGCAAGTACCTCAGACAAGACAATTTTTTGGAGATCGATGTG GATATCGGGTCATCGTCAGTTGCAAGGAGCGTCATTGGCCTGGTTCTTGGATATGTTACAAGCTTAGTTGTTGATCTTGCGATTCTCGTTGAGGGGAAGG AAGAGAGTGAGCTGCCAGAGTTCATCTTAGGTACCGTAAGGCTGAACAAACTGAAGGTGGAAACTGCTGTGACATTGGAGGTTTGA
AA sequence Show only first row Show all	>Lus10019068 pacid=23152697 polypeptide=Lus10019068 locus=Lus10019068.g ID=Lus10019068.BGIv1.0 annot-version=v1.0 MEGPAITETEVTVRKVRGVSIGSEKEMFDGASSSVSGSSGKGEDKGAFEYFGWIYHLGTNTIGHDYCHLRFLFIRGKYVEMYKRDPHENPGISDKGTLVK AVGVVDASADTVFEVFLNLDQQQRYEWKSNRDFVFSRQWFRGQDGTYTSSWEIRNLSPSTGSNTARCLVSQMLEMNQVGWCRWKQNRRSDFEKTAPYAML TQVAGLKEYIGASPALRVESSTTVVRSKSLMGSIDFDAAEVNDEFYDATDGESSSDEEEGDSDGSHANKNGRVKLKNVSWAIAGLASKKTSAPDANDTLD PNVPPISIESNEFNGSLHKGKDEKDSNCWTSPDGSGFKIRGRTYLKDNSKVVGGDPLLELIAVDWFKVDRAVDGVAQHPECLLQTAAGKKLPFVLVINLQ VQISQSDTKLKSILLFQIPAKPNYSLVLYYAADRPVNKESLLGKFIDGTDMFRDSRFKLIPSIVEGYWMVKRAVGTKACLLGKAVTCKYLRQDNFLEIDV DIGSSSVARSVIGLVLGYVTSLVVDLAILVEGKEESELPEFILGTVRLNKLKVETAVTLEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35180			Protein of unknown function (D...		Lus10019068 [exp]	0	1
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Lus10015918 [exp]	5.2	0.8476
AT5G57700			BNR/Asp-box repeat family prot...		Lus10006994 [exp]	6.0	0.8432
AT1G77800			PHD finger family protein (.1....		Lus10009786 [exp]	8.4	0.8229
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10021012 [exp]	9.9	0.8384
AT1G29750		RKF1	receptor-like kinase in flower...		Lus10005418 [exp]	13.9	0.8325
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10009404 [exp]	21.5	0.8256
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10013470 [exp]	21.9	0.8131
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10030424 [exp]	23.4	0.8122
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10023241 [exp]	26.8	0.8355
AT4G13040	AP2_ERF		Integrase-type DNA-binding sup...		Lus10011836 [exp]	29.1	0.8182

Compare expression of checked genes

Lus10019068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.