Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02040 60 / 2e-11 unknown protein AT4G32020 56 / 8e-10 unknown protein AT2G25250 52 / 2e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012773 [exp] 53 / 2e-08 AT3G21570 67 / 7e-14 unknown protein Lus10034002 [exp] 47 / 2e-06 AT3G21570 70 / 5e-15 unknown protein Lus10005344 [exp] 46 / 4e-06 AT4G32020 66 / 1e-13 unknown protein Lus10041025 [exp] 45 / 5e-06 AT2G25250 60 / 8e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G027500 [exp] 69 / 2e-14 AT4G02040 55 / 1e-09 unknown protein Potri.006G260000 [exp] 67 / 4e-14 AT4G32020 47 / 1e-06 unknown protein Potri.018G022400 [exp] 57 / 2e-10 AT4G32020 62 / 2e-12 unknown protein Potri.008G198000 [exp] 56 / 2e-09 AT4G02040 56 / 9e-10 unknown protein Potri.005G241800 [exp] 40 / 0.0007 AT1G20070 / unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019069 pacid=23152696 polypeptide=Lus10019069 locus=Lus10019069.g ID=Lus10019069.BGIv1.0 annot-version=v1.0 ATGGCGACGGCGATCCTCTCTCCTCGAGACTGCCTCCAAGATCGGTTCCATCGCGATACCCTATCCAGTGCGAGAAGAATTAAAGGAGATCTGATCGCTA ACCCTAACCCTAACTCGACCAACTCTCGCCGCCGGAAGCGGAACCCGACCGGTAATCGAAGAGATGCCGATAGTCGAAACCAATCGCGATCTCAATCTCA ACCACTGGTGGCCAAGCTTCCCGGTAGCAATCTCGTGATGGGCGAGGTCAAGATCTTGAAGCGTGGGGAGTTGTTGAACTCTGTGGAAAAGAAGATGCCT CAGGCGGCAGAGGGTCTGAAGTTGAAGAAGGAAGATAAGAAGAAGAAGAAGAACGGAGGGAAGGTGGTGTCAGATCTAGGTTTGGGATCGACTGATCGGC TAGGGCCGGATCCTGAGACAGTCCAGAAGGAAGTTAGGGCTCAAGAATTTAATAACAACAAAGTTGTGGATGGGATGTTGTATGCAGGCTCGGCGTTTTT CACCTCGCCGCCTCCAAGCTCGCTTCCGGTCCCGGCTTTTCTCAGGAAATCCGATGCCACGGCTGGCCTCCGGCGATTACTGGGGCTGAATCTGGTTTAG
AA sequence Show only first row Show all	>Lus10019069 pacid=23152696 polypeptide=Lus10019069 locus=Lus10019069.g ID=Lus10019069.BGIv1.0 annot-version=v1.0 MATAILSPRDCLQDRFHRDTLSSARRIKGDLIANPNPNSTNSRRRKRNPTGNRRDADSRNQSRSQSQPLVAKLPGSNLVMGEVKILKRGELLNSVEKKMP QAAEGLKLKKEDKKKKKNGGKVVSDLGLGSTDRLGPDPETVQKEVRAQEFNNNKVVDGMLYAGSAFFTSPPPSSLPVPAFLRKSDATAGLRRLLGLNLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02040			unknown protein		Lus10019069 [exp]	0	1
AT4G29680			Alkaline-phosphatase-like fami...		Lus10008562 [exp]	2.4	0.8809
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10004109 [exp]	2.6	0.9050
AT1G08700		PS1	Presenilin-1 (.1)		Lus10020339 [exp]	3.5	0.8821
					Lus10032951 [exp]	4.2	0.8683
AT2G37035			unknown protein		Lus10026520 [exp]	7.3	0.8320
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Lus10007274 [exp]	8.9	0.8808
AT5G51830			pfkB-like carbohydrate kinase ...		Lus10031668 [exp]	9.9	0.8671
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10031982 [exp]	11.5	0.8646
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032155 [exp]	11.8	0.8767
AT2G37110			PLAC8 family protein (.1)		Lus10026492 [exp]	12.0	0.8691

Compare expression of checked genes

Lus10019069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.