Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02050 472 / 2e-164 STP7 sugar transporter protein 7 (.1) AT1G77210 351 / 3e-117 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT5G26340 341 / 5e-113 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT3G19940 310 / 3e-101 Major facilitator superfamily protein (.1) AT3G19930 307 / 5e-100 ATSTP4, STP4 sugar transporter 4 (.1) AT5G23270 304 / 6e-99 ATSTP11, STP11 sugar transporter 11 (.1) AT1G11260 299 / 7e-97 ATSTP1, STP1 sugar transporter 1 (.1) AT4G21480 298 / 8e-97 STP12 sugar transporter protein 12 (.1) AT3G05960 298 / 2e-96 ATSTP6 sugar transporter 6 (.1) AT5G26250 297 / 3e-96 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036325 [exp] 541 / 0 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1) Lus10002450 [exp] 330 / 1e-108 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10010534 [exp] 329 / 2e-108 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10022421 [exp] 327 / 1e-107 AT1G77210 790 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Lus10013441 [exp] 325 / 8e-107 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10021924 [exp] 323 / 6e-106 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10018422 [exp] 305 / 6e-99 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10040991 [exp] 298 / 3e-96 AT3G19940 666 / 0.0 Major facilitator superfamily protein (.1) Lus10005870 [exp] 288 / 2e-92 AT5G26250 601 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G113300 [exp] 490 / 1e-171 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.006G189100 [exp] 490 / 2e-171 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.001G253800 [exp] 363 / 1e-121 AT1G77210 737 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Potri.018G085200 [exp] 355 / 1e-118 AT1G77210 771 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Potri.007G073850 [exp] 342 / 8e-114 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073800 [exp] 342 / 8e-114 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.005G090700 [exp] 334 / 1e-110 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.007G072800 [exp] 333 / 4e-110 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073900 [exp] 332 / 1e-109 AT3G19940 706 / 0.0 Major facilitator superfamily protein (.1) Potri.008G151100 [exp] 329 / 1e-108 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10019070 pacid=23152659 polypeptide=Lus10019070 locus=Lus10019070.g ID=Lus10019070.BGIv1.0 annot-version=v1.0 ATGGCAGGAGGATCATTTGTTCCGGGTGGGGTGGGAAAGGAGAGGGCACAACAGTACCAAGGAAAAGTGACTAGCTCTGTCATCATTGCTTGTTTTGTTG CTGCAATTGGTGGCTCCCTCTTTGGCTACGATGTTGGCATCTCAGGCAAGTTTCTGTCTTCTTTCTTTCTATTTCTCTTCCGTGAAATTGCAGACCTGGG TGGGGTCACATCCATGGATGGATTTCTGAAGAAGTTCTTCCCTCATGTGTATGAGAAGAAGCAACATGCCCATGAAAACAACTATTGCAAGTTTGATGAT CAGGGCCTGGCAACTTTCACTTCTTCTCTTTACCTTGCTGGTCTGGTTGCATCCCTGGTGGCGAGTCCAATAACAAGAGCTCACGGTCGTCGCATCACTA TAATCATTGGTGGCTTCAGCTTCTTAATGGGAGCATCGTTGAATGCTGCAGCCGTCCATATAGCAATGCTCCTGCTAGGCCGCATCTTGCTTGGCATCGG CATTGGATTCGGGAATCAGGCTGTTCCACTATACCTATCAGAAATGGCACCAACCCATCTCCGAGGAGGACTGAATATGTTGTTTCAGTTGGCGACAACT CTTGGGATCTTCTCGGCGAACATGGTTAACTATGGAACTCAGAAGCTTGAGCCTTGGGGTTGGAGGTTATCATTGGGATTGGCAGCAGTTCCTGCTTTGC TAATGGCAATGGGTGGAATGCTGCTTCCTGAAACACCTAACAGTTTGATTGAAAGAGGGTTAGAAGAGAAAGGAAGGAAGGTACTGGAGAAAATCAGAGG AACAACCAATGTAGAAGCAGAATTCGAGGATATGGTGGATGCAAGTGAGATGGCTAACTCAATCAAACATCCATTCAGAAACATCCTCGAACGAAGGAAT AGACCGCAACTGGTTATGGCGATTTGCATGCCAGCATCCCAAATCATGACTGGCATAAACTCAATCCTCTTCTATGCTCCTGTGTTGTTTCAGAGCATGG GTTTTGGGAGAGATGCTTCCCTTTACTCATCAGCCTCAACAGGCCAATGCTTCCTTTCCATGCTTTGTGCTTTCAAATTCGGCATCTTCCTTTTCTTCGC CGCCTGTGTCACCGTTATGACTGCATTCGTCTACCTATTCCTCCCTGAAACCAAAGGAATCCCCATCGAAGAAACCGTCTTCTTGTGGAGAAGACACTGG TTCTGGAAGAAGATAGTTGGCCAGGAACTAGAATCACATGGAAATCAGATATAA
AA sequence Show only first row Show all	>Lus10019070 pacid=23152659 polypeptide=Lus10019070 locus=Lus10019070.g ID=Lus10019070.BGIv1.0 annot-version=v1.0 MAGGSFVPGGVGKERAQQYQGKVTSSVIIACFVAAIGGSLFGYDVGISGKFLSSFFLFLFREIADLGGVTSMDGFLKKFFPHVYEKKQHAHENNYCKFDD QGLATFTSSLYLAGLVASLVASPITRAHGRRITIIIGGFSFLMGASLNAAAVHIAMLLLGRILLGIGIGFGNQAVPLYLSEMAPTHLRGGLNMLFQLATT LGIFSANMVNYGTQKLEPWGWRLSLGLAAVPALLMAMGGMLLPETPNSLIERGLEEKGRKVLEKIRGTTNVEAEFEDMVDASEMANSIKHPFRNILERRN RPQLVMAICMPASQIMTGINSILFYAPVLFQSMGFGRDASLYSSASTGQCFLSMLCAFKFGIFLFFAACVTVMTAFVYLFLPETKGIPIEETVFLWRRHW FWKKIVGQELESHGNQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10019070 [exp]	0	1
AT2G37530			unknown protein		Lus10024416 [exp]	7.5	0.9134
AT2G40370		LAC5	laccase 5 (.1)		Lus10007531 [exp]	8.4	0.9060
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10005999 [exp]	12.6	0.9021
AT3G11780			MD-2-related lipid recognition...		Lus10021256 [exp]	13.7	0.9031
AT3G45850			P-loop containing nucleoside t...		Lus10009073 [exp]	16.6	0.8903
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Lus10041142 [exp]	21.2	0.8997
AT1G79700	AP2_ERF		Integrase-type DNA-binding sup...		Lus10005513 [exp]	22.5	0.8818
AT5G44550			Uncharacterised protein family...		Lus10000781 [exp]	23.4	0.8887
AT1G68850			Peroxidase superfamily protein...		Lus10029094 [exp]	27.4	0.8870
					Lus10008896 [exp]	29.7	0.8662

Compare expression of checked genes

Lus10019070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.