Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35170 722 / 0 adenylate kinase family protein (.1.2) AT5G47840 215 / 6e-65 AMK2 adenosine monophosphate kinase (.1) AT2G37250 108 / 4e-26 ADK, ATPADK1 adenosine kinase (.1) AT5G50370 105 / 3e-25 Adenylate kinase family protein (.1) AT5G63400 103 / 1e-24 ADK1 adenylate kinase 1 (.1.2) AT2G39270 101 / 2e-23 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25280 78 / 7e-16 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G26667 71 / 1e-13 PYR6 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT3G60180 66 / 4e-12 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G01820 51 / 7e-07 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036326 [exp] 796 / 0 AT5G35170 658 / 0.0 adenylate kinase family protein (.1.2) Lus10037995 [exp] 182 / 1e-53 AT5G47840 315 / 9e-110 adenosine monophosphate kinase (.1) Lus10009478 [exp] 172 / 2e-50 AT5G47840 293 / 1e-101 adenosine monophosphate kinase (.1) Lus10009228 [exp] 174 / 1e-49 AT5G47840 296 / 3e-101 adenosine monophosphate kinase (.1) Lus10003504 [exp] 154 / 2e-42 AT5G47840 300 / 1e-102 adenosine monophosphate kinase (.1) Lus10016757 [exp] 103 / 1e-24 AT5G63400 416 / 2e-149 adenylate kinase 1 (.1.2) Lus10023476 [exp] 104 / 2e-24 AT2G37250 407 / 2e-144 adenosine kinase (.1) Lus10040358 [exp] 103 / 6e-24 AT2G37250 405 / 1e-143 adenosine kinase (.1) Lus10030296 [exp] 102 / 7e-24 AT2G37250 395 / 1e-139 adenosine kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G113400 [exp] 780 / 0 AT5G35170 838 / 0.0 adenylate kinase family protein (.1.2) Potri.013G103400 [exp] 212 / 1e-63 AT5G47840 347 / 1e-120 adenosine monophosphate kinase (.1) Potri.019G078200 [exp] 206 / 2e-61 AT5G47840 332 / 8e-115 adenosine monophosphate kinase (.1) Potri.006G189201 [exp] 134 / 6e-37 AT5G35170 158 / 1e-46 adenylate kinase family protein (.1.2) Potri.012G095300 [exp] 108 / 1e-26 AT5G63400 419 / 1e-150 adenylate kinase 1 (.1.2) Potri.008G046100 [exp] 109 / 3e-26 AT2G37250 377 / 1e-132 adenosine kinase (.1) Potri.010G215300 [exp] 103 / 2e-24 AT2G37250 382 / 2e-134 adenosine kinase (.1) Potri.015G092800 [exp] 99 / 3e-23 AT5G63400 425 / 6e-153 adenylate kinase 1 (.1.2) Potri.014G104700 [exp] 72 / 6e-14 AT5G26667 275 / 8e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.014G043300 [exp] 69 / 5e-13 AT5G26667 358 / 2e-127 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00406 [flax] [poplar] ADK Adenylate kinase CL0023 [flax] [poplar] PF09353 [flax] [poplar] DUF1995 Domain of unknown function (DUF1995)
Representative CDS sequence Show only first row Show all	>Lus10019071 pacid=23152671 polypeptide=Lus10019071 locus=Lus10019071.g ID=Lus10019071.BGIv1.0 annot-version=v1.0 ATGGTGTCCGTTAAACCGTTAAGAAAGATCCTGGACGATGCTGCAGTAGCCGAGCACAGTCTGCAAACGCAATGTTGCTCATCACTTCAAATCCGTTGTC TATCCACTGCTCCTCCTCCGCCGCCGCACTGTCATCTCTTTCCGCCGCTCCTTCTCTTCCCCTTTTCTCTTCTTCCGTTTCTTCCCACCACTTGTCGTCC CACCCCCACCAGGTGCTCGTTGCTTCCACTTCCTCCGCCCATTTCAGGATCAAATCCACCCCAAGGGCTTCAGAATCAGATGCTCTGCCGTCGAGCCCCT GAAGGTGATGATATATGGCGCTCCGGCTTCTGGCAAGGGCACTCAGTGCGAGCTTATTGTTCAAAAGATGTGTGGCAGTTTGGATTGGTGCACATATCTA CTGGAGACCTCTTGAGAGCTGAAGTGTCAGCTGGGACAGAAATTGGGAATAAGGCTAAGGAGTTCATGAATGCTGGAAGTTTGGTTCCTGATGAAGTTGT CACTGCTATGGTCACAGCGAGACTTTCAAGGGACGATGCAATGGAGAGAGGTTGGCTTCTCGATGGCTATCCGCGCACTTCTTCCCAAGCCGAGAGTCTG CAGAAACTAAACATTAGACCGGATATCTACATTGTGTTGAATGTTCCGGATGAAGTCCTAATCGACAGATGTGTTGGTAGAATGCTGGATCCTGTCACGG GGAAGATTTACCGCGTTAAGAACTTCCTTCCGGCGACTGACGAAATCAAAGCAAGGCTTACTGTGCGTGCTGATGACACTGAGGAAAAGGTCAAATCTCG CCTTCAGATCTATAAAAAAAATGCTGAAGCCACATTCTCCACTTATTCAAATGTAATAAAGCTGATAGATGGAAACCGTTCGAAAGAGGTAATTTCTGGG GAGATTGTGAGCCTGCTGACCCAATTGCAGGAGGACAAATCCAAACCAATCAAATCAGGAACACCTGTACTTGCAAGTAAGAGAAATCCCAGTGAGACAT CAGCTAATCCGGATAAATGGAGAGGGATCCCTACTAGATTGAACAATATCCCCCATTCCAGTGAAATCAGGAATTACTTCTACAACGATGTTCTTCAAGC GACTCAAAGAGCTGTAAACGATGGTAGAACGTGTTTAAGGGTTGACATCAACATCCCTGAACTTAACCCTGATATGGACGTTTATCGAATAGGTACCCTG ATGGAACTCGTCAGGGAGATTGCTCTTTCGTTTGCAGATGATGGGAAACGCGTTAAGGTTTGTGTTCAAGGGTCTATGGGTATCGGTGCCCTTGCTGGAA TGCCACTGCAACTTGCTGGTACGCAAAAGATCTTGGAATACATGGATTGGGGTAACGATGGTGCCATGGGGACCTTTGTCAATCTCGGTTCGATAGGTGC ACAAGAAGTTGAAGAACAAGATGATATGTTCATCTTAATTGCTCCTCAGAATGCTGTAGGAAATTGCATCATCTATGCCCTAGAAGCCATGACAAATGCT GCTGGGAGTAGACCAGTTATTCTGATAAACCCAAAACTAAAGGATTTGCCTGCCTCAAGTGGAATCATGCAAACTATGGGACGTGAAGAAAGACTCCGGT ATGCTGCTTCCTTCGAAAGTTGCTACTCCTTCCGGCTTCTCTATTATGCAGGATCTCAATATCCAATCATGGGAGCTCTAAGGATGGCATATCCATACCC TTATGAACTGTTCAAGAGGGTAGACGACGAGCCAGGAAAAGAGAAGTATTTAGTTTTGGAAACATTTCCAGAGAAACCAACTTCTGACCAGATCAATAAC GCTTTCCTGGGAAGAACAAGCCAACCACAAAGAAGGGCCAAAGTACATGGTGGTGGAGTTGACCGATGCAGATGCAGCATGGGAGTAGCCGTCCTTGTTA TTTGA
AA sequence Show only first row Show all	>Lus10019071 pacid=23152671 polypeptide=Lus10019071 locus=Lus10019071.g ID=Lus10019071.BGIv1.0 annot-version=v1.0 MVSVKPLRKILDDAAVAEHSLQTQCCSSLQIRCLSTAPPPPPHCHLFPPLLLFPFSLLPFLPTTCRPTPTRCSLLPLPPPISGSNPPQGLQNQMLCRRAP EGDDIWRSGFWQGHSVRAYCSKDVWQFGLVHISTGDLLRAEVSAGTEIGNKAKEFMNAGSLVPDEVVTAMVTARLSRDDAMERGWLLDGYPRTSSQAESL QKLNIRPDIYIVLNVPDEVLIDRCVGRMLDPVTGKIYRVKNFLPATDEIKARLTVRADDTEEKVKSRLQIYKKNAEATFSTYSNVIKLIDGNRSKEVISG EIVSLLTQLQEDKSKPIKSGTPVLASKRNPSETSANPDKWRGIPTRLNNIPHSSEIRNYFYNDVLQATQRAVNDGRTCLRVDINIPELNPDMDVYRIGTL MELVREIALSFADDGKRVKVCVQGSMGIGALAGMPLQLAGTQKILEYMDWGNDGAMGTFVNLGSIGAQEVEEQDDMFILIAPQNAVGNCIIYALEAMTNA AGSRPVILINPKLKDLPASSGIMQTMGREERLRYAASFESCYSFRLLYYAGSQYPIMGALRMAYPYPYELFKRVDDEPGKEKYLVLETFPEKPTSDQINN AFLGRTSQPQRRAKVHGGGVDRCRCSMGVAVLVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35170			adenylate kinase family protei...		Lus10019071 [exp]	0	1
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Lus10006145 [exp]	1.7	0.8159
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10001121 [exp]	6.9	0.8118
AT1G18600		ATRBL12	ARABIDOPSIS RHOMBOID-LIKE PROT...		Lus10007614 [exp]	8.1	0.7637
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10013394 [exp]	11.3	0.7607
AT1G70630			Nucleotide-diphospho-sugar tra...		Lus10006212 [exp]	12.2	0.7749
AT5G01510		RUS5	ROOT UV-B SENSITIVE 5, Protein...		Lus10027788 [exp]	14.1	0.8048
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10026832 [exp]	18.7	0.7631
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10036522 [exp]	19.3	0.8047
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10007675 [exp]	19.8	0.7495
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10015068 [exp]	22.4	0.7960

Compare expression of checked genes

Lus10019071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.