Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35160 750 / 0 Endomembrane protein 70 protein family (.1.2) AT4G12650 635 / 0 Endomembrane protein 70 protein family (.1) AT3G13772 409 / 4e-135 AtTMN7 transmembrane nine 7 (.1) AT2G24170 408 / 8e-135 Endomembrane protein 70 protein family (.1) AT1G55130 405 / 1e-133 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1) AT5G10840 396 / 4e-130 Endomembrane protein 70 protein family (.1) AT5G25100 396 / 4e-130 Endomembrane protein 70 protein family (.1.2) AT1G14670 220 / 8e-64 Endomembrane protein 70 protein family (.1) AT5G37310 219 / 2e-63 Endomembrane protein 70 protein family (.1) AT2G01970 219 / 4e-63 Endomembrane protein 70 protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027831 [exp] 794 / 0 AT5G35160 1104 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10005060 [exp] 792 / 0 AT5G35160 1100 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10016072 [exp] 649 / 0 AT4G12650 1123 / 0.0 Endomembrane protein 70 protein family (.1) Lus10037643 [exp] 409 / 4e-135 AT3G13772 1134 / 0.0 transmembrane nine 7 (.1) Lus10015624 [exp] 409 / 4e-135 AT3G13772 1133 / 0.0 transmembrane nine 7 (.1) Lus10000222 [exp] 406 / 5e-134 AT5G10840 1071 / 0.0 Endomembrane protein 70 protein family (.1) Lus10026254 [exp] 394 / 4e-129 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10042415 [exp] 394 / 5e-129 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10036327 [exp] 333 / 4e-104 AT3G09850 468 / 8e-154 D111/G-patch domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G189300 [exp] 757 / 0 AT5G35160 1122 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.018G113500 [exp] 757 / 0 AT5G35160 1127 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.002G217300 [exp] 640 / 0 AT4G12650 1122 / 0.0 Endomembrane protein 70 protein family (.1) Potri.014G172200 [exp] 640 / 0 AT4G12650 1115 / 0.0 Endomembrane protein 70 protein family (.1) Potri.003G038700 [exp] 410 / 1e-135 AT3G13772 1085 / 0.0 transmembrane nine 7 (.1) Potri.006G184200 [exp] 403 / 7e-133 AT2G24170 961 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G018400 [exp] 402 / 2e-132 AT5G10840 1070 / 0.0 Endomembrane protein 70 protein family (.1) Potri.006G264500 [exp] 398 / 2e-130 AT5G10840 1059 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G106600 [exp] 395 / 1e-129 AT2G24170 971 / 0.0 Endomembrane protein 70 protein family (.1) Potri.003G015300 [exp] 241 / 2e-71 AT1G10950 897 / 0.0 transmembrane nine 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [flax] [poplar] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Lus10019073 pacid=23152688 polypeptide=Lus10019073 locus=Lus10019073.g ID=Lus10019073.BGIv1.0 annot-version=v1.0 ATGGGATATGGTATGACGACACCACAGCCAAGAAAGAAGATCCCTAGTAGTGCTAGAGACTCTTGGTCATCAGGCTTTGATGATATCATGTTTGTGAAAG ATCCGAGGACTGTGTCTGGCAAGAAGAAGCATGTTGCCCAACTGCCTCAATCCTGGCCAGCAGCTCAAAAGGGTAAACGTTACAGAAACTACCCAGGAGA AAAGACGAAATTCCGCAAAGAAATGATCGCTGAGAAACGCCGTGTCAGAATGCTACAGCGAGGGGTGGACTTGGAGGAGATAAATATGAAACTGGAGCAG ATAGTTTCAAATAAAGTGGATATATTTTCTTTCCCGCCTATGCATTCAAAGGATTGCTCTCAGGTAAAACGGCTTGCAGCAATTTACCGTTTGCGTAGTG GGGCCCAGGGTCAGGGTAGAAAAGGTTTGTTGCAGTTTAAAATTGATATACATTGCAGAGTCGTTGATGCTGCAATTTCCATATGTTCCAGGTTTGTCAC TGTGATGCGTACTCAGCATACATCCATGCCGTCTGCGAATGATAGAGTCCGCCTTGAAAAGCTCGTGTTATGGGGAATCAATTGTGATCCTACCACTGTG GCCTTGCCCATCAAGGAGAATGAACCCATGGTTTTTACTTATGAGGTTACATTTGAGGAGAGTGATATCAAGTGGCCTTCCAGATGGGATGCGTATTTGA AGATGGAAGGTTCCAAGGTACATTGGTTCTCCATCATGAACTCGATGATGGTGATTACTTTCCTTGCTGGTATTGTCCTTGTAATCTTCCTGAGGACCGT CAGGCGGGATCTCACTCGTTACGAGGAGCTAGATAAGGAGGCTCAAGCACAGATGAACGAAGAGCTATCTGGATGGAAGCTTGTTGTAGGGGATGTTTTC CGTGCCCCATCAAATTCGGCTCTTCTCTGTGTTATGGTGGCTAATGGTGTTCAGATTCTTGGAATGGCTATTGCGACTGTACTTTTTGCTGCTCTTGGGT TCATGTCGCCAGCCTCTCGTGGAACTCTCCTTACCGGTATGCTAGTCTTCTTCATGATCCTCGGAATCGCTGCTGGATATGCAGCGGTTCGACTATGGAG AACGATGGGCTGTGGGGATGGAAAGGGATGGGCTTCAGTTTCCTGGAAAGTTGCATGTTTCTTCCCTGGTATTGCATTTGTAATCCTAACCACATTGAAC ACCCTGCTATGGCATAGTAACAGCACTGGTGCAATCCCATTCTCATTATTCGTCGTACTGATCCTTCTCTGGTTTTGCATCTCCGTTCCATTGACCCTAA TTGGAGGATACTTTGGTGCAAGGGCGCCTCACATTGAGTACCCGGTTCGTACGAACCAGATACCTAGGGAAATCCCAGCTCAAAAATACCCATCTTGGCT GCTTGTTCTGGGTGCAGGAACTCTGCCATTCGGTACACTCTTCATTGAGCTCTTCTTTATCATGTCTAGCATATGGATGGGTCGTGTGTACTACGTTTTC GGGTTCCTTTTGATCGTATTCATCCTTCTGGTGGTGGTTTGTGCTGAAGTTTCCCTTGTCCTGACATACATGCATCTGTGCGTTGAAGATTGGAAATGGT GGTGGAAATCATTCTTTGCATCTGGTTCAGTTGCAATTTACATCTTCTTGTACTCCATAAATTACCTAGTCTTTGATCTTAAGAGCCTAAGTGGCCCTGT CTCCGCCACCCTCTACCTTGGCTACTCGTTACTGATGGTTTTAGCTATCATGCTCGCCACTGGCACTGTTGGGTTCCTGTCGTCCTTCTGGTTCGTGCAT TACTTGTTCTCTTCAGTAAAGCTGGATTGA
AA sequence Show only first row Show all	>Lus10019073 pacid=23152688 polypeptide=Lus10019073 locus=Lus10019073.g ID=Lus10019073.BGIv1.0 annot-version=v1.0 MGYGMTTPQPRKKIPSSARDSWSSGFDDIMFVKDPRTVSGKKKHVAQLPQSWPAAQKGKRYRNYPGEKTKFRKEMIAEKRRVRMLQRGVDLEEINMKLEQ IVSNKVDIFSFPPMHSKDCSQVKRLAAIYRLRSGAQGQGRKGLLQFKIDIHCRVVDAAISICSRFVTVMRTQHTSMPSANDRVRLEKLVLWGINCDPTTV ALPIKENEPMVFTYEVTFEESDIKWPSRWDAYLKMEGSKVHWFSIMNSMMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVF RAPSNSALLCVMVANGVQILGMAIATVLFAALGFMSPASRGTLLTGMLVFFMILGIAAGYAAVRLWRTMGCGDGKGWASVSWKVACFFPGIAFVILTTLN TLLWHSNSTGAIPFSLFVVLILLWFCISVPLTLIGGYFGARAPHIEYPVRTNQIPREIPAQKYPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVYYVF GFLLIVFILLVVVCAEVSLVLTYMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDLKSLSGPVSATLYLGYSLLMVLAIMLATGTVGFLSSFWFVH YLFSSVKLD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35160			Endomembrane protein 70 protei...		Lus10019073 [exp]	0	1
AT4G32390			Nucleotide-sugar transporter f...		Lus10002904 [exp]	1.4	0.9447
AT2G25430			epsin N-terminal homology (ENT...		Lus10002920 [exp]	2.0	0.9394
AT5G57460			unknown protein		Lus10000167 [exp]	2.2	0.9386
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10007979 [exp]	3.5	0.9419
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032189 [exp]	3.5	0.9404
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10019477 [exp]	4.5	0.9268
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032190 [exp]	4.6	0.9351
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10032649 [exp]	4.9	0.9346
AT3G07950			rhomboid protein-related (.1)		Lus10036521 [exp]	4.9	0.9358
AT1G61790			Oligosaccharyltransferase comp...		Lus10018363 [exp]	5.2	0.9303

Compare expression of checked genes

Lus10019073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.