Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18660 582 / 0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT1G75460 79 / 6e-16 ATP-dependent protease La (LON) domain protein (.1) AT1G19740 79 / 6e-16 ATP-dependent protease La (LON) domain protein (.1) AT3G27330 77 / 2e-14 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G24800 56 / 6e-08 PRT1 proteolysis 1 (.1) AT2G26350 55 / 9e-08 PEX10, ATPEX10 peroxin 10 (.1) AT1G74990 52 / 1e-07 RING/U-box superfamily protein (.1) AT2G42030 53 / 3e-07 RING/U-box superfamily protein (.1) AT5G05130 52 / 1e-06 DNA/RNA helicase protein (.1) AT3G58030 50 / 2e-06 RING/U-box superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015722 [exp] 862 / 0 AT1G18660 667 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10022324 [exp] 80 / 1e-15 AT3G27330 251 / 4e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10032119 [exp] 80 / 1e-15 AT3G27330 251 / 1e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10024294 [exp] 56 / 6e-09 AT1G75460 313 / 2e-109 ATP-dependent protease La (LON) domain protein (.1) Lus10025930 [exp] 53 / 3e-07 AT3G24800 287 / 2e-93 proteolysis 1 (.1) Lus10038169 [exp] 53 / 7e-07 AT5G48800 482 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10022492 [exp] 49 / 2e-06 AT2G23780 241 / 1e-80 RING/U-box superfamily protein (.1) Lus10016796 [exp] 49 / 3e-06 AT2G23780 242 / 3e-81 RING/U-box superfamily protein (.1) Lus10039127 [exp] 50 / 5e-06 AT5G39550 776 / 0.0 VARIANT IN METHYLATION 3, ORTHRUS 1, Zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G068100 [exp] 679 / 0 AT1G18660 679 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Potri.001G336832 [exp] 77 / 4e-15 AT3G27330 235 / 2e-69 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.005G232800 [exp] 72 / 2e-13 AT1G75460 366 / 2e-128 ATP-dependent protease La (LON) domain protein (.1) Potri.002G029900 [exp] 71 / 3e-13 AT1G75460 373 / 3e-131 ATP-dependent protease La (LON) domain protein (.1) Potri.003G178700 [exp] 64 / 2e-10 AT3G24800 269 / 9e-86 proteolysis 1 (.1) Potri.001G049300 [exp] 54 / 8e-08 AT3G24800 199 / 7e-61 proteolysis 1 (.1) Potri.014G191400 [exp] 53 / 1e-07 AT5G48655 158 / 8e-49 RING/U-box superfamily protein (.1.2.3) Potri.002G241900 [exp] 54 / 2e-07 AT3G24800 314 / 2e-103 proteolysis 1 (.1) Potri.002G245500 [exp] 52 / 2e-07 AT5G48655 154 / 2e-47 RING/U-box superfamily protein (.1.2.3) Potri.007G031600 [exp] 51 / 5e-07 AT2G23780 227 / 4e-75 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0178 [flax] [poplar] PUA PF02190 [flax] [poplar] LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain
Representative CDS sequence Show only first row Show all	>Lus10019075 pacid=23141760 polypeptide=Lus10019075 locus=Lus10019075.g ID=Lus10019075.BGIv1.0 annot-version=v1.0 ATGGCCGGAGAATCGCAGAGGCCTTCCTCTGTCACTGCTGTCCCTTTGGAAGGTCTCGACGACGTTGAGGATTACATTCGAGCACCCGAAGGAGATGGAT CACTGACTTGGGATCGATTTAATCATGTGTTTGATCTTGTGATGAATGGGAACCAGGCTTTCCGAGATAACCGTTTTGAGGAGGACCTAGGATTTAAGCT GGTTTATTACATTGTCAACAAGGCGAGACACATTCTTGATTCACTGCTAATGTCATTTCTTGTGCAAATTCCATCAATTGCTACTCTAGAGCCAACAACA TCAAACCGAATGATCCCGTCATTCTTGGCAATCGAAGTGCTGCTTATTGCAGTATTAATCTGTGCTTTGCTGCACATTGCAACTATCATCTTCCTTCCAA CCAGGGTTAGTGAATACCTCAAACAGAGACCTGCATCTGCTTCTGAATATAGGCCATTGAATGGGCTGGATCCTACTATACATGCTGAACTGGCACTTAA GGATGCTGAAAAGGTGTTCAACATTAGGAAGAATTCAGTGAAGTCGTACATTTTAAAGGCTGGTGCCCTTGTGTTGTTGGAGAAGTATGAGTTGGCCCAC GATGTTGTTCTATCTGGTCTTGAGGTCGATCCCTCAAGCAATCCCCTCCGAGATTATCGTCAGAATTTGGAGAGAATGGTAGCTGCTACAATCAAAAGAT CCTCTGCAAAGCCTGAACGCAGTGATGATTTTGATTGCACTCTTTGCTTGAAGTTACTCTTTGAGCCCGTAACAACTCCTTGTGGTCATTCTTTTTGCCG CTCGTGTCTTTTCCAGTCCATGGATCGTGGCAATAAATGTCCATTGTGCCGAACAGTCCTTTTCGTCGGTCCTCGAACTTGTGCAGTCAGTGTGACATTG AACAACATTATACAGAAGACTTTCCCTGTGGAATATGCTGAAAGGAAGTCCGAGAATGACAGTTTGACCAACCTTGGTGTTGATTTGATTCCTCTTTTTG TGATGGATGTTGTCATACCATGCCAAAAGTTTCCACTTCATATATTTGAGCCTCGGTACAGATTAATGGTAAGAAGGATCATGGAAGGGAACCGTCGAAT GGGAATGGTTATTGTTGATCCTCTTACAGGTGTATTGGCTGATTATGCTTGTGAAGTGGAAATTACTGAGTGCGAGCCACTTCCAGACGGGAGATTCTAT CTAGAGATTGAAAGTCGTCGTAGATTTCGAGTTCTTCGGTCTTGGGATCAAGATGGATATCGTGTTGCAGAGGTTGAGTGGGTCCAAGATCATAAGCCAC AACAACCAGAGGAAAAACTACAAGAATTGACAAATAATGCTGCAGAATACACAAGCTCCTGGTTACAGAAAGCGAGGGAAGCTGCAAGACAAGGACATGA ATTTAGTAATAAAAAGCTTGCTTCTTTAGCAGATCGAAGAAAACTCGAGAAACTTCTCAACGTTGAATCAATGATGCCAGCAACAACCGATCCTGAGCGT TTTAGCTTCTGGCTAGCTACACTATCGGATAGGAGACCTAATGAAAAGTTGGAACTTCTTCGCTTAACGGATACAGCAGAGGTACGCCTTTTGCAACTTC ATGTGCTTAGAAACCTATATACAGATTGTAGCACTGACTGGGGGTTGTTTTGCTGCACAGAGAATAAGAAGGGGACTGGTATATTTGAAAGCAGCAGAAC AAGGTTGCAGGGTGCAGTAATGGCGGTTTAG
AA sequence Show only first row Show all	>Lus10019075 pacid=23141760 polypeptide=Lus10019075 locus=Lus10019075.g ID=Lus10019075.BGIv1.0 annot-version=v1.0 MAGESQRPSSVTAVPLEGLDDVEDYIRAPEGDGSLTWDRFNHVFDLVMNGNQAFRDNRFEEDLGFKLVYYIVNKARHILDSLLMSFLVQIPSIATLEPTT SNRMIPSFLAIEVLLIAVLICALLHIATIIFLPTRVSEYLKQRPASASEYRPLNGLDPTIHAELALKDAEKVFNIRKNSVKSYILKAGALVLLEKYELAH DVVLSGLEVDPSSNPLRDYRQNLERMVAATIKRSSAKPERSDDFDCTLCLKLLFEPVTTPCGHSFCRSCLFQSMDRGNKCPLCRTVLFVGPRTCAVSVTL NNIIQKTFPVEYAERKSENDSLTNLGVDLIPLFVMDVVIPCQKFPLHIFEPRYRLMVRRIMEGNRRMGMVIVDPLTGVLADYACEVEITECEPLPDGRFY LEIESRRRFRVLRSWDQDGYRVAEVEWVQDHKPQQPEEKLQELTNNAAEYTSSWLQKAREAARQGHEFSNKKLASLADRRKLEKLLNVESMMPATTDPER FSFWLATLSDRRPNEKLELLRLTDTAEVRLLQLHVLRNLYTDCSTDWGLFCCTENKKGTGIFESSRTRLQGAVMAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18660			zinc finger (C3HC4-type RING f...		Lus10019075 [exp]	0	1
AT3G16560			Protein phosphatase 2C family ...		Lus10004793 [exp]	2.0	0.7723
					Lus10009807 [exp]	2.4	0.7669
AT1G03260			SNARE associated Golgi protein...		Lus10028016 [exp]	3.0	0.6566
AT5G07630			lipid transporters (.1)		Lus10027222 [exp]	4.5	0.6565
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10000806 [exp]	7.2	0.6828
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10006209 [exp]	8.9	0.6763
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10036857 [exp]	9.3	0.7191
AT5G46910			Transcription factor jumonji (...		Lus10030988 [exp]	14.0	0.6495
AT5G56450		PM-ANT	Mitochondrial substrate carrie...		Lus10013518 [exp]	15.7	0.6578
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Lus10028677 [exp]	16.9	0.6523

Compare expression of checked genes

Lus10019075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.