Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07720 744 / 0 Galactosyl transferase GMA12/MNN10 family protein (.1) AT1G74380 725 / 0 XXT5 xyloglucan xylosyltransferase 5 (.1) AT1G18690 645 / 0 Galactosyl transferase GMA12/MNN10 family protein (.1) AT3G62720 536 / 0 ATXT1, XXT1 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) AT4G02500 523 / 0 ATXT2, XXT2 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) AT4G37690 306 / 2e-100 Galactosyl transferase GMA12/MNN10 family protein (.1) AT2G22900 306 / 3e-100 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G38310 100 / 2e-25 Galactosyl transferase GMA12/MNN10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015721 [exp] 865 / 0 AT5G07720 741 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10021631 [exp] 806 / 0 AT5G07720 766 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10000563 [exp] 800 / 0 AT5G07720 759 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10037519 [exp] 538 / 0 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10002870 [exp] 536 / 0 AT4G02500 779 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037516 [exp] 536 / 0 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037514 [exp] 424 / 3e-147 AT3G62720 615 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Lus10037520 [exp] 320 / 9e-109 AT4G02500 449 / 3e-159 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10011550 [exp] 323 / 1e-106 AT2G22900 571 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G061800 [exp] 769 / 0 AT5G07720 730 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.012G068300 [exp] 744 / 0 AT5G07720 755 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.008G208000 [exp] 540 / 0 AT4G02500 773 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025300 [exp] 534 / 0 AT4G02500 775 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025100 [exp] 505 / 1e-178 AT3G62720 674 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Potri.014G006100 [exp] 307 / 1e-100 AT2G22900 592 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.007G005900 [exp] 303 / 3e-99 AT2G22900 593 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF05637 [flax] [poplar] Glyco_transf_34 galactosyl transferase GMA12/MNN10 family
Representative CDS sequence Show only first row Show all	>Lus10019076 pacid=23141731 polypeptide=Lus10019076 locus=Lus10019076.g ID=Lus10019076.BGIv1.0 annot-version=v1.0 ATGATCCCTCGGGGGCGGCAGATCCACAAGACCTTCAACAACATTAAAATCACCATCCTCTGCGGCTTCATCACCATCCTCGTTCTCCGCGGCACAATCG GCTTCGGCAACCTCTCCAGCTCCGAAGCCGACGCCGTCAACCAAAACCTCATCGAAGAAACCAACCGCCTCCTAGCCGAGATCCGCTCCGACAAAGAACC AACCGATGGACCTCCCGCCTCAGACGACAGCTCCGAATTCCTCTCCACTAACACCACCTACACTCTCGGTCCCAAAATCTCCGAGTGGGATAATCAGCGT AAGGTATGGCTCTCCCAAAACCCTGATTTCCCCAGCTCGGTCAACGGTAAACCTAGGATTCTTCTCCTCACCGGTTCCCCGCCAAACCCGTGCGACAACC CGATCGGAGATCATTATCTGTTAAAAGCCGTTAAGAACAAGATTGATTACTGTAGGATTCACGGGATTGAGATAGTTTACAACATGGCTCATTTGGATAA GGAGCTAGCTGGTTACTGGGCGAAATTGCCCATGATTAGGAGGCTGATGCTGTCTCATCCCGAAGTGGAGTGGATTTGGTGGATGGATAGTGACGCTATG TTCACTGACATGGTGTTTGAGATCCCTCAGTCCAAGTACACTGACCACAACTTGGTGATCCATGGCTACCCCGATCTGCTCTTCGAGCAGAAATCGTGGA TTGCGTTGAACACTGGCAGTTTCTTGTTCAGGAACTGCCAGTGGAGTCTCGATCTGCTTGATGTCTGGGCTCCCATGGGACCCAAGGGGCCGATTCGCGA GGAGGCTGGTAAAATCCTAACAGCTAACCTGAAAGGTCGGCCGGCATTCGAGGCCGACGATCAGTCGGCATTGATCTATTTACTTCTCTCCCAGAAGGAG AAGTGGATGGACAAGGTGTACGTGGAGAATCAGTATTACTTGCACGGATACTGGTTAGGGTTGGTGGATAGGTACGAAGAGATGATGGAGAAGTATCAAC CCGGTTTGGGTGACGAGAGGTGGCCTTTCGTCACACATTTTGTGGGGTGCAAGCCTTGTGGGAGCTATGGGGATTACCCTGTTGAGAAGTGCTTGAAGAG TATGGAGAGGGCTTTCAATTTCGCTGATAATCAGGTGCTTAAGTTTTATGGGTTCGGGCATAGAGGGTTGTTGAGCGCCAAGATCAAGAGGATCACAAAC GAAACTGCAACTCCGTTGGAGTATATGGACCGAGTTGATATTCGTCGTCCAGTCCCAAAGAGCTAG
AA sequence Show only first row Show all	>Lus10019076 pacid=23141731 polypeptide=Lus10019076 locus=Lus10019076.g ID=Lus10019076.BGIv1.0 annot-version=v1.0 MIPRGRQIHKTFNNIKITILCGFITILVLRGTIGFGNLSSSEADAVNQNLIEETNRLLAEIRSDKEPTDGPPASDDSSEFLSTNTTYTLGPKISEWDNQR KVWLSQNPDFPSSVNGKPRILLLTGSPPNPCDNPIGDHYLLKAVKNKIDYCRIHGIEIVYNMAHLDKELAGYWAKLPMIRRLMLSHPEVEWIWWMDSDAM FTDMVFEIPQSKYTDHNLVIHGYPDLLFEQKSWIALNTGSFLFRNCQWSLDLLDVWAPMGPKGPIREEAGKILTANLKGRPAFEADDQSALIYLLLSQKE KWMDKVYVENQYYLHGYWLGLVDRYEEMMEKYQPGLGDERWPFVTHFVGCKPCGSYGDYPVEKCLKSMERAFNFADNQVLKFYGFGHRGLLSAKIKRITN ETATPLEYMDRVDIRRPVPKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07720			Galactosyl transferase GMA12/M...		Lus10019076 [exp]	0	1
AT5G07720			Galactosyl transferase GMA12/M...		Lus10015721 [exp]	2.0	0.9109
AT5G35700		FIM2, FIM5	FIMBRIN5, fimbrin-like protein...		Lus10006407 [exp]	3.2	0.8644
AT2G23093			Major facilitator superfamily ...		Lus10014854 [exp]	7.1	0.7998
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10023485 [exp]	10.5	0.8704
AT1G08590			Leucine-rich receptor-like pro...		Lus10027951 [exp]	10.5	0.8143
AT3G28040			Leucine-rich receptor-like pro...		Lus10035687 [exp]	12.8	0.8761
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039440 [exp]	22.2	0.8509
AT3G47570			Leucine-rich repeat protein ki...		Lus10033363 [exp]	23.5	0.7578
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Lus10031150 [exp]	25.0	0.8619
AT3G26700			Protein kinase superfamily pro...		Lus10041509 [exp]	25.7	0.8437

Compare expression of checked genes

Lus10019076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.