Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61390 523 / 0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G07710 493 / 4e-172 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G74390 458 / 8e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT4G39810 274 / 3e-89 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) ATMG01050 41 / 0.0005 ATMG01050.1, ORF159 unknown protein AT2G07672 41 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015719 [exp] 945 / 0 AT5G61390 541 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000567 [exp] 701 / 0 AT5G61390 480 / 8e-167 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10016807 [exp] 266 / 7e-86 AT4G39810 297 / 2e-101 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10022503 [exp] 266 / 1e-85 AT4G39810 305 / 2e-104 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G062000 [exp] 619 / 0 AT5G61390 543 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.007G088500 [exp] 286 / 2e-94 AT4G39810 311 / 3e-108 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.005G079100 [exp] 277 / 2e-90 AT4G39810 344 / 3e-120 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00929 [flax] [poplar] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Lus10019078 pacid=23141772 polypeptide=Lus10019078 locus=Lus10019078.g ID=Lus10019078.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCCACCTCCATCGCCAAAATCACCGGCGACCCGTCGGAGATTGCTTTCTTCGACGTGGAAACCACCGTCCCGACCCGACCTGGCCAGGGGT ACGCTCTTCTGGAGTTCGGAGCGATTTTGGTGTGTCCCAAAACTCTCGAGGAGCTCCATAGCTACTCCACGCTCATCCGCCCGTCGAATCCTTCACTGAT CACTTCATTGTCCGTCCGCTGCAACGGCATCACTCGTGGCGCCGTCTGCACTGCTCCTTGCTTCTCCGACATCGCCGATACCGTCTATGGCATCCTCCAT GGGAGGATTTGGGCGGGACATAATATACTGAGGTTCGATTGCCCTAGAATTAGAGAAGCTTTTGCTGCTATTGGAAGGCCAGCTCCCGAGCCTAAGGGGA CTATTGATTCCTTGGCCTTGTTGACTCAGAGGTTTGGAAGGAGAGCTGGTAACATGAAGATGGCTACTCTGGCTACATACTTTGGGCTTGGGAAGCAGAC TCATAGGAGCTTGGATGATGTTCGGATGAACCTTGAAGTTGTGAAATACTGTGCCACTGTTTTATTCCTGGAATCGAGTCTTCCAGAGACATTTCCAGAA AAAAGCTGTGTTTCACCTAATGTTACTACCAGAAGCCGCAAGATGGGGAAATCGGTTATTGATGCAATGGATTCAAATGAGAATAATCCTTCAAGTTCGA AGTCAGCTGAGCATTCAACTGCGAGAAGCCATCCGATATTATCTCTTGTGACCAGTAGCGTTGTTGAAAATACAGACCCTTTCGACATGAGTGTGCTCGG AGATGAGGTGAATACCGAGTCCTTGGAGAAGGATGTTCCTATGGAAGAAAATCCCGTCGTAGAAATTGCTGAAATGCCACTAGCAGCTGCAGTTCCAGCT TCGAACAGTAACAATGTAGAAATTGTACAGCTTAACAATGTCTCTGTTCCTTTGATCAGGGCAGCTTATGTTCCGTATCCCAGCGGAGGTCAAAAGATCT CGTTATTCCACAAGGATGCCCAATTCGAGCTGTATTGTCCTTGTTTAAAAGTGCGGTTCGGACTCAGCACAAAGTTCCTCGACTATGCTGGAAGGCCACG ACTGAGTTTCATGGTTGATCTATCTCCGAGTTTGTGTAGCGTTCTTGATGCTTGTGATGAACTTGCCCTGAACTTATTCCAAGGTTCAGGGAGTGAATCT AATTGGAGGCGGGTTGTAGTACGACATGATAAATACACCAACTACCCTAAAGCAAGGCTCAACATACCCACTTTGGTAGATGGGAATGTTGGTCAATATG CGACGGAGATGTACCAGAAAGAACGATCAGGAACCATGCAAAAGATCCTATTCTGCAAGTTTGATCCAGAGGAGCTGGAGCCATGGCTTAACCCCGGAAC ATTTCTGGATGCATACCTCTCCCTAGATACCTACGATTATCAAAACAGCGCCGGAATTCGACTTGTGGTGAAGAAACTGGTGATCCATAATGAATGA
AA sequence Show only first row Show all	>Lus10019078 pacid=23141772 polypeptide=Lus10019078 locus=Lus10019078.g ID=Lus10019078.BGIv1.0 annot-version=v1.0 MAASTSIAKITGDPSEIAFFDVETTVPTRPGQGYALLEFGAILVCPKTLEELHSYSTLIRPSNPSLITSLSVRCNGITRGAVCTAPCFSDIADTVYGILH GRIWAGHNILRFDCPRIREAFAAIGRPAPEPKGTIDSLALLTQRFGRRAGNMKMATLATYFGLGKQTHRSLDDVRMNLEVVKYCATVLFLESSLPETFPE KSCVSPNVTTRSRKMGKSVIDAMDSNENNPSSSKSAEHSTARSHPILSLVTSSVVENTDPFDMSVLGDEVNTESLEKDVPMEENPVVEIAEMPLAAAVPA SNSNNVEIVQLNNVSVPLIRAAYVPYPSGGQKISLFHKDAQFELYCPCLKVRFGLSTKFLDYAGRPRLSFMVDLSPSLCSVLDACDELALNLFQGSGSES NWRRVVVRHDKYTNYPKARLNIPTLVDGNVGQYATEMYQKERSGTMQKILFCKFDPEELEPWLNPGTFLDAYLSLDTYDYQNSAGIRLVVKKLVIHNE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61390			Polynucleotidyl transferase, r...		Lus10019078 [exp]	0	1
AT2G40116			Phosphoinositide-specific phos...		Lus10009894 [exp]	2.6	0.7920
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10023983 [exp]	14.1	0.7762
AT2G19930			RNA-dependent RNA polymerase f...		Lus10012965 [exp]	17.4	0.7891
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Lus10017379 [exp]	20.8	0.7626
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10018698 [exp]	21.5	0.7794
AT3G15390		SDE5	silencing defective 5 (.1.2)		Lus10025646 [exp]	28.2	0.7578
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10036268 [exp]	30.3	0.7658
					Lus10024691 [exp]	30.3	0.7252
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10013562 [exp]	32.0	0.7477
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Lus10040584 [exp]	32.7	0.7749

Compare expression of checked genes

Lus10019078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.