Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48910 206 / 1e-60 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G50270 202 / 2e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 199 / 2e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G56310 198 / 2e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14820 200 / 5e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G08305 196 / 8e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G59720 196 / 6e-57 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G01510 194 / 1e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 194 / 1e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 191 / 3e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015718 [exp] 589 / 0 AT5G66520 357 / 6e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 214 / 3e-63 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013341 [exp] 203 / 7e-61 AT1G05750 525 / 0.0 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 202 / 4e-59 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026006 [exp] 202 / 5e-59 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 201 / 7e-59 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007772 [exp] 196 / 6e-58 AT4G37170 281 / 6e-87 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007341 [exp] 192 / 5e-56 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10000117 [exp] 187 / 8e-56 AT4G21065 404 / 5e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G003600 [exp] 277 / 3e-88 AT5G66520 354 / 1e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G119000 [exp] 229 / 5e-69 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 217 / 6e-65 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 218 / 1e-64 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G191200 [exp] 216 / 2e-64 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 212 / 2e-62 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G001000 [exp] 206 / 1e-60 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G135400 [exp] 205 / 1e-60 AT1G31920 738 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G066100 [exp] 206 / 9e-60 AT5G13270 977 / 0.0 REQUIRED FOR ACCD RNA EDITING 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 204 / 2e-59 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10019079 pacid=23141744 polypeptide=Lus10019079 locus=Lus10019079.g ID=Lus10019079.BGIv1.0 annot-version=v1.0 ATGATCGGCACGGGAGTGGAGGCAGACGGATTCACTTATACTTTTGCTCTGAGCAGCTGCGCCAAGTTAGGGTCATTGAGAGAAGGGGAGCAGCTTCACG GGAGAGCTTTGTCAACCGGACATTGCACGAACGTGTTTGTGAACACCAGTTTGCTCAATATGTACGCGAATGTAGAATGCAAGTCCGGAATGGGGTGTGC ACGCAAGGTGTTCGATGAAATGGGTGAAAGAAAAAATGTTGCCACTTGGAACACTTTACTTGTGGGGCATTTTTGGTTTGGGGATTTTGAATTAGCTAGG GATTTGTTCGATGAAATGCCTGAGAGGAATGTAGTGTCCTGGACAGTTATGATTGCAGCGCACGCCAGAAGTGGCAAGTGTAAGCATGCGTTGATTTTAT TCGATCGGATGAGGAAATCCGGAGTGGAACTCGACCAGGTGGCTTTAGTGGCAGCCTTGTCAGCTTGTGCTGAAATTGGGGATTTGAAGCTAGACTTCGG AGCCAAAGAAGCAAAGCCCGACGAAATAACCTTCATTGGAGTTCTTTCTGCTTGTAGCCACGGTGGATATGTCAATGAAGGCCGCAAATTTTTCAACGAC ATGGTCTGCAACTGGGGTGTTAGCCCTAGAATTGAGCATTACCGTTCTGTTGTTGATTTATACAGTCGTGCTGACCTTCTCGAAGAAGCAAGCGACCTTA TCAAGACCATGCCCATGAAACCAAATGATGCAGTGTGGGGTGCTTTACTTGGTGGTTGCAGAATTCACAAGAGTGCTGAACTTGCCTCTCTCGTAGCTCG ATCGATGCTGGTTGAGGAGCTCGACCCTGACCAGGCTGCCGGGTATCCAGTGCTGTTGGCTCATGTGTTTACAAGTGATCAGAGGTGGCGAGACGTGGCT ACCATGAGGCGAAAGATGGTAGAGATTGGGGCCAGGAAGCCTGCTGGCCGGAGTTGGGTTGAAGTGAACGGTTCGGTTTATGAGTTCATTTCCGGTGACT GGACTCGTGAGAACACGTCAGACATCTACGATGTTATCGGCAGCATCTCCGACCAGGCTAAGCCGGAAGAGGAACATCGACACAAATCCGATGTTTTGAT GTTCTTGCCCAATACATAA
AA sequence Show only first row Show all	>Lus10019079 pacid=23141744 polypeptide=Lus10019079 locus=Lus10019079.g ID=Lus10019079.BGIv1.0 annot-version=v1.0 MIGTGVEADGFTYTFALSSCAKLGSLREGEQLHGRALSTGHCTNVFVNTSLLNMYANVECKSGMGCARKVFDEMGERKNVATWNTLLVGHFWFGDFELAR DLFDEMPERNVVSWTVMIAAHARSGKCKHALILFDRMRKSGVELDQVALVAALSACAEIGDLKLDFGAKEAKPDEITFIGVLSACSHGGYVNEGRKFFND MVCNWGVSPRIEHYRSVVDLYSRADLLEEASDLIKTMPMKPNDAVWGALLGGCRIHKSAELASLVARSMLVEELDPDQAAGYPVLLAHVFTSDQRWRDVA TMRRKMVEIGARKPAGRSWVEVNGSVYEFISGDWTRENTSDIYDVIGSISDQAKPEEEHRHKSDVLMFLPNT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19020		MEF18	mitochondrial editing factor ...		Lus10019079 [exp]	0	1
AT3G17740			unknown protein		Lus10031899 [exp]	2.0	0.8159
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10000295 [exp]	5.5	0.7376
AT3G13810	C2H2ZnF	ATIDD11	indeterminate(ID)-domain 11 (....		Lus10004840 [exp]	6.0	0.7382
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Lus10006642 [exp]	6.3	0.6776
AT2G32000			DNA topoisomerase, type IA, co...		Lus10021692 [exp]	8.5	0.7773
AT1G36390			Co-chaperone GrpE family prote...		Lus10042696 [exp]	9.2	0.7430
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10010186 [exp]	15.2	0.7066
					Lus10042671 [exp]	18.0	0.6675
AT1G76280			Tetratricopeptide repeat (TPR)...		Lus10001597 [exp]	18.4	0.6414
AT3G06790			plastid developmental protein ...		Lus10037488 [exp]	23.0	0.7010

Compare expression of checked genes

Lus10019079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.