Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61400 159 / 5e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G38730 75 / 3e-15 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G64320 73 / 2e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 71 / 9e-14 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 68 / 6e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G48810 68 / 7e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 67 / 2e-12 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G09680 66 / 4e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 64 / 1e-11 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 64 / 1e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015717 [exp] 404 / 1e-144 AT5G61400 151 / 4e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008185 [exp] 78 / 4e-16 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027974 [exp] 76 / 2e-15 AT1G19290 480 / 1e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013077 [exp] 74 / 7e-15 AT5G40400 587 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032174 [exp] 70 / 1e-13 AT5G38730 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034421 [exp] 69 / 3e-13 AT2G02150 706 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038804 [exp] 68 / 6e-13 AT5G64320 367 / 3e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 68 / 7e-13 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026465 [exp] 67 / 2e-12 AT1G05670 197 / 6e-55 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G015900 [exp] 73 / 1e-14 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G040200 [exp] 72 / 5e-14 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G071600 [exp] 69 / 2e-13 AT5G40400 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075900 [exp] 67 / 9e-13 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G074500 [exp] 67 / 9e-13 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G035700 [exp] 67 / 2e-12 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.003G204100 [exp] 66 / 4e-12 AT1G07740 502 / 2e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G368700 [exp] 65 / 7e-12 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G234500 [exp] 64 / 1e-11 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G154800 [exp] 64 / 1e-11 AT4G20090 816 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10019080 pacid=23141818 polypeptide=Lus10019080 locus=Lus10019080.g ID=Lus10019080.BGIv1.0 annot-version=v1.0 ATGTATAAGCCGCTCATTCCAAAATGCTTTACGATCGTCAACGCTCCCCAAAACCCTCGTCTCTCCTTATTCCTATTCTCTTCTTCTTACTCCTCTCCTC CCTCTTCGCCGCCTTCTGATCTCACATCCGCCATTCTCAACTCCAGAACCCCTGACCAAGCCCTCCAACTCTTCACCTCCGTCGTAAATCGCAACTCCAA ATCCCCAGTGAAAAACCTTCCACATTTCTCCGCCGTGATTCACGTGTTAACCGGTGCTGGTGCGTACACGCCTGCCAGGTGCTTGATAAAAGGCCTGATC CAGTCCTTCCTGAAATCCCACGACCCAAAACGTGCTAGCTCGTTGATTTTCGACGCTCTTAGTCGGCTGAAGAGCTCCAAATTCACTTCCGATGTGTTCG GGACGTTGATTATTGCACTCTGTGAGGTGGGACTTGTTGATGAAGCCCTGTGGGTGCACCGCAAGATTGGTACTTTACCAGCGAGGCAAGCTTGTAATGC CCTTATGAATGGGCTAGTTAAGAAAGGGAGATTCGAATCCATGTGGGAAACTTATGAAGAAATGATTTCCGGTGGGTTGGTGCCTAGTGTTGTCAGTTAT GGCGTACTGATCAATGCTTGTTGCTGCCAAGGTGATCTAATAAAGGCGGCGGCTTTGATTAGCGAGATTATGGAGAAAGGGATTCAGCCCCACCGTTGTG ATCTACACAACTCTCATTCGTGGGTTTTGCTGTGA
AA sequence Show only first row Show all	>Lus10019080 pacid=23141818 polypeptide=Lus10019080 locus=Lus10019080.g ID=Lus10019080.BGIv1.0 annot-version=v1.0 MYKPLIPKCFTIVNAPQNPRLSLFLFSSSYSSPPSSPPSDLTSAILNSRTPDQALQLFTSVVNRNSKSPVKNLPHFSAVIHVLTGAGAYTPARCLIKGLI QSFLKSHDPKRASSLIFDALSRLKSSKFTSDVFGTLIIALCEVGLVDEALWVHRKIGTLPARQACNALMNGLVKKGRFESMWETYEEMISGGLVPSVVSY GVLINACCCQGDLIKAAALISEIMEKGIQPHRCDLHNSHSWVLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61400			Pentatricopeptide repeat (PPR)...		Lus10019080 [exp]	0	1
					Lus10005528 [exp]	4.1	0.8566
AT4G24200			Transcription elongation facto...		Lus10009128 [exp]	6.5	0.8336
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Lus10016911 [exp]	11.1	0.7897
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10032139 [exp]	11.6	0.8462
AT5G16280			Tetratricopeptide repeat (TPR)...		Lus10013588 [exp]	14.6	0.8368
AT3G17900			unknown protein		Lus10036712 [exp]	18.0	0.8186
AT4G24680		MOS1	modifier of snc1 (.1)		Lus10042094 [exp]	19.2	0.8359
AT2G25320			TRAF-like family protein (.1)		Lus10002926 [exp]	23.5	0.8310
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10038816 [exp]	24.0	0.8189
AT2G47330			P-loop containing nucleoside t...		Lus10011466 [exp]	25.0	0.8260

Compare expression of checked genes

Lus10019080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.