Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61400 395 / 2e-132 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16640 225 / 1e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 218 / 1e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 217 / 2e-64 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 213 / 5e-63 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 215 / 6e-63 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G16710 210 / 8e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 211 / 3e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 209 / 1e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02150 211 / 3e-61 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015716 [exp] 774 / 0 AT5G61400 408 / 1e-137 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 221 / 4e-65 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 214 / 6e-62 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 212 / 1e-61 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008593 [exp] 209 / 2e-61 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10022861 [exp] 206 / 9e-61 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10012068 [exp] 211 / 1e-60 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024962 [exp] 204 / 3e-60 AT1G62680 346 / 3e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 205 / 4e-60 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G014500 [exp] 233 / 3e-69 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G045000 [exp] 229 / 5e-69 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G147700 [exp] 229 / 6e-69 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G131400 [exp] 226 / 6e-68 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 224 / 2e-67 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 223 / 6e-67 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 223 / 2e-66 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 221 / 3e-66 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050240 [exp] 221 / 4e-66 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034300 [exp] 217 / 4e-66 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10019081 pacid=23141705 polypeptide=Lus10019081 locus=Lus10019081.g ID=Lus10019081.BGIv1.0 annot-version=v1.0 ATGACGGAAGCTGAGTTTTGGTTCAGACATATGCAGGAACTGGGGATATTTCCCAATTTGCATACTTACAATATTATGATGGATGGCCACTGTAAAATGG CAAATGTTAAGCGAGCCCTTGTGTTATATTATGAATTGCTTGAGCGGCGTCTCCAGATTAATGCTATTACTTTCGGAACTTTGATAGATGGGTTTTGCAA AGCTGGTGCCTTTTCAGCTGCGAGGAGCCTGTTTGCCCACATGGAAAAGCTTGGTGTTCCCCCCAACACAGCTGTGTATAATTGCTTGATTGATGGGCTC TCCAAGGCAGGAAACCTCTCCAAAGCTATTGATTTGCATCTGGAGATGCAAAAGCTGGAAATTGCACCTGATGTCCTAACGTGCCGTATACTTGTGGAAG GTCTTTGCTGCATTGGCAGGCTAGAAGCAGCAGAAGGCTTACTGGAAATGATGAGCAGAGAAGGGGTCGTTCCAAACTCTGTGACCTATAATTCGCTAAT TAAAGGGTACTGCAAAGAAGGCAACATGGTAAAGGCTCTGAAACGAACTTCTGAAATGACAGAAAAGGGCGTGGAACCAAATGCCATCACTTTCTCTACA TTGATTGATGGATATTGCAAGGAGGACAATATGCAGGCTGCCTCAGCCCTCTTCTCCGAAATGGTAATAAAAAATATCGTCCTGGATGTGGTTGCATTTA CGGCTTTGATTGATGGCCATTGTAAAAATGGGAATATGACAGAGGCCCTTCGCATCTTTAACCAGATGTTGGAGGCACAAATCACTCCCAACGTTCTTAC AATCACTTGTTTGATTGATGGTCTTTGCAAACGTGGGAAGTTGCATGACGCAGTTAAACTTTTCTTGGAGAGAACTAAGAGTTGCACGGATGGATTATGT TATCCAAATCATGTCATGTATACATCGTTGATTCAAGGTCTGTGCAAGAATGGACAAATTTTCAAAGCCAGCAAGTTCTTCTCAGATATGAGACGGGATG GTGTAAGACCTGACGAACTGACTTACAAGATCATGCTCCAAGGGCACTTAGTTGTCAAGCATATGTTCGATGTCATGATGTTGCATTGCGACACAATAAA GATGGGTGTTCTTGGGAGTAAGATGATATATCAGGTCCTAGCAGAAGGCTATCAAGCCAACGGATATCAGAAGTCAGCTCTATGGTGCTCCAAGGAGTTT GAGTGA
AA sequence Show only first row Show all	>Lus10019081 pacid=23141705 polypeptide=Lus10019081 locus=Lus10019081.g ID=Lus10019081.BGIv1.0 annot-version=v1.0 MTEAEFWFRHMQELGIFPNLHTYNIMMDGHCKMANVKRALVLYYELLERRLQINAITFGTLIDGFCKAGAFSAARSLFAHMEKLGVPPNTAVYNCLIDGL SKAGNLSKAIDLHLEMQKLEIAPDVLTCRILVEGLCCIGRLEAAEGLLEMMSREGVVPNSVTYNSLIKGYCKEGNMVKALKRTSEMTEKGVEPNAITFST LIDGYCKEDNMQAASALFSEMVIKNIVLDVVAFTALIDGHCKNGNMTEALRIFNQMLEAQITPNVLTITCLIDGLCKRGKLHDAVKLFLERTKSCTDGLC YPNHVMYTSLIQGLCKNGQIFKASKFFSDMRRDGVRPDELTYKIMLQGHLVVKHMFDVMMLHCDTIKMGVLGSKMIYQVLAEGYQANGYQKSALWCSKEF E

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61400			Pentatricopeptide repeat (PPR)...		Lus10019081 [exp]	0	1
AT2G01390		EMB3111	EMBRYO DEFECTIVE 3111, Tetratr...		Lus10028525 [exp]	4.7	0.7957
AT1G01290		CNX3	cofactor of nitrate reductase ...		Lus10033117 [exp]	11.5	0.7719
AT3G01610		CDC48C, EMB1354	embryo defective 1354, cell di...		Lus10039722 [exp]	14.2	0.8137
AT1G49540		ELP2, AtELP2	Elongator subunit 2, elongator...		Lus10013487 [exp]	17.3	0.7923
AT1G31840			Tetratricopeptide repeat (TPR)...		Lus10001284 [exp]	19.0	0.7181
AT1G26580			unknown protein		Lus10036888 [exp]	27.5	0.7293
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Lus10010507 [exp]	27.6	0.7190
AT5G53440			unknown protein		Lus10019025 [exp]	43.1	0.7206
AT4G03000			RING/U-box superfamily protein...		Lus10021954 [exp]	56.0	0.6865
AT4G27680			P-loop containing nucleoside t...		Lus10022361 [exp]	60.1	0.6950

Compare expression of checked genes

Lus10019081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.