Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61410 265 / 6e-89 RPE, EMB2728 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) AT3G01850 92 / 2e-22 Aldolase-type TIM barrel family protein (.1.2) AT1G63290 89 / 3e-21 Aldolase-type TIM barrel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015715 [exp] 278 / 7e-94 AT5G61410 457 / 4e-164 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10001653 [exp] 259 / 6e-87 AT5G61410 476 / 6e-172 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10021627 [exp] 259 / 1e-86 AT5G61410 452 / 2e-162 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10032052 [exp] 92 / 4e-22 AT1G63290 362 / 4e-128 Aldolase-type TIM barrel family protein (.1) Lus10035219 [exp] 91 / 7e-21 AT3G01850 372 / 6e-130 Aldolase-type TIM barrel family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G062100 [exp] 262 / 8e-88 AT5G61410 494 / 4e-179 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Potri.001G332700 [exp] 90 / 1e-21 AT3G01850 387 / 2e-138 Aldolase-type TIM barrel family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00834 [flax] [poplar] Ribul_P_3_epim Ribulose-phosphate 3 epimerase family
Representative CDS sequence Show only first row Show all	>Lus10019083 pacid=23141837 polypeptide=Lus10019083 locus=Lus10019083.g ID=Lus10019083.BGIv1.0 annot-version=v1.0 ATGTCGACTTCTGGTTCTTTATGTTGTTCGGCTCGGATCAACGGAGTCCAAAGGAGGAGCCTTTTTCAGCCAACTTCAATTCCTCGCCATCCAGGGTACT TGCTCGGATTGAAATTCTCACTGGGCTTTGCTGTCTTTCGCTATTCCTCGCCGGGTCTCGCTGCTAAGTGGCTAACTGAGAAAGTCGCTCAGTCTAATTT GAGAACGGGCTTCGGATTGAAATGCTCTTGTCACGATGTGGAACTTGCAAGTTTGAATCTTTTATTGTTTGTGATAATGCATGCATCAGTCAACTCTTGG ATCGGCATTTGGAAAAGAGTGGATTTCGTAGTTAAGGCGATGTCTCGCGTAGATAAATTCTCGAAAAGCGACATCATCGTTTCGCCATCTATCCTTACAG CTAATTTTGCAAAGTTGGGAGAGCAGGTAAAAGCAGTAGAGGTGGCAGGATGTGACTGGATTCATATCGATGTGATGGATGACCGGTTTGTGCCAAACAT CACGATCAGACCTCTCGTGGTCGATGCCCTTCGCCCTGTGACAGACCTTCCCTTGGATGTCCATTTGATGATTGTGGAACCTGACCAACGTGTGCCGGAT TTTATTAAGGCTGGAGCTGACATAGTCAGTGTCCACTGTGAACAAGCTTCCACCATTCATCTGCATCGTACTGTCAACCAGATAAAAAGTCTTGGAGCCA AAGCTGGAGTTGTGTTGAACCCTGCCTCCCCTTTGAGCGCCATTGATTAA
AA sequence Show only first row Show all	>Lus10019083 pacid=23141837 polypeptide=Lus10019083 locus=Lus10019083.g ID=Lus10019083.BGIv1.0 annot-version=v1.0 MSTSGSLCCSARINGVQRRSLFQPTSIPRHPGYLLGLKFSLGFAVFRYSSPGLAAKWLTEKVAQSNLRTGFGLKCSCHDVELASLNLLLFVIMHASVNSW IGIWKRVDFVVKAMSRVDKFSKSDIIVSPSILTANFAKLGEQVKAVEVAGCDWIHIDVMDDRFVPNITIRPLVVDALRPVTDLPLDVHLMIVEPDQRVPD FIKAGADIVSVHCEQASTIHLHRTVNQIKSLGAKAGVVLNPASPLSAID

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Lus10019083 [exp]	0	1
AT1G56500			haloacid dehalogenase-like hyd...		Lus10020699 [exp]	2.4	0.9339
AT1G32080		AtLrgB	membrane protein, putative (.1...		Lus10012137 [exp]	3.2	0.9223
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10003876 [exp]	5.3	0.9161
AT1G71810			Protein kinase superfamily pro...		Lus10017924 [exp]	5.5	0.9104
AT5G02830			Tetratricopeptide repeat (TPR)...		Lus10015053 [exp]	7.5	0.9205
AT1G80770		PDE318	pigment defective 318, P-loop ...		Lus10019508 [exp]	10.4	0.8949
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10001823 [exp]	13.7	0.9019
AT1G56500			haloacid dehalogenase-like hyd...		Lus10029840 [exp]	14.5	0.9050
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001839 [exp]	14.7	0.8987
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Lus10008032 [exp]	15.9	0.8774

Compare expression of checked genes

Lus10019083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.