Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08570 223 / 4e-73 ACHT4 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) AT5G61440 212 / 1e-68 ACHT5 atypical CYS HIS rich thioredoxin 5 (.1) AT2G33270 200 / 2e-63 ACHT3 atypical CYS HIS rich thioredoxin 3 (.1) AT4G29670 162 / 2e-49 ACHT2 atypical CYS HIS rich thioredoxin 2 (.1.2) AT4G26160 153 / 6e-46 ACHT1 atypical CYS HIS rich thioredoxin 1 (.1) AT3G51030 52 / 2e-08 ATTRX1, ATTRXH1 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) AT5G16400 48 / 1e-06 TRXF2, ATF2 thioredoxin F2 (.1) AT3G15360 48 / 1e-06 ATHM4, ATM4, TRX-M4 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) AT1G69880 47 / 2e-06 ATH8 thioredoxin H-type 8 (.1) AT3G02730 46 / 5e-06 TRXF1, ATF1 thioredoxin F-type 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015711 [exp] 416 / 8e-149 AT1G08570 220 / 2e-71 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10020254 [exp] 223 / 3e-72 AT1G08570 318 / 1e-109 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10002640 [exp] 220 / 2e-71 AT1G08570 320 / 2e-110 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10026878 [exp] 216 / 2e-69 AT1G08570 332 / 7e-115 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10003437 [exp] 213 / 3e-68 AT1G08570 324 / 4e-112 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10007994 [exp] 167 / 8e-49 AT4G29670 268 / 6e-88 atypical CYS HIS rich thioredoxin 2 (.1.2) Lus10040554 [exp] 163 / 3e-47 AT4G29670 265 / 7e-87 atypical CYS HIS rich thioredoxin 2 (.1.2) Lus10014277 [exp] 52 / 2e-08 AT3G51030 185 / 4e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10041799 [exp] 51 / 3e-08 AT3G51030 182 / 8e-61 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G031900 [exp] 224 / 1e-72 AT1G08570 325 / 4e-112 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Potri.013G061200 [exp] 224 / 2e-72 AT1G08570 295 / 4e-100 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Potri.006G150700 [exp] 171 / 1e-52 AT4G29670 259 / 9e-88 atypical CYS HIS rich thioredoxin 2 (.1.2) Potri.018G066500 [exp] 162 / 4e-49 AT4G29670 253 / 3e-85 atypical CYS HIS rich thioredoxin 2 (.1.2) Potri.005G232700 [exp] 55 / 1e-09 AT3G51030 162 / 5e-53 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.007G018000 [exp] 54 / 2e-09 AT3G51030 186 / 2e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.012G045000 [exp] 54 / 4e-08 AT3G17880 379 / 4e-131 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.015G036000 [exp] 50 / 6e-07 AT3G17880 396 / 3e-137 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.019G054800 [exp] 48 / 2e-06 AT3G02730 204 / 1e-67 thioredoxin F-type 1 (.1) Potri.006G049100 [exp] 45 / 4e-05 AT2G41680 785 / 0.0 NADPH-dependent thioredoxin reductase C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10019087 pacid=23141748 polypeptide=Lus10019087 locus=Lus10019087.g ID=Lus10019087.BGIv1.0 annot-version=v1.0 ATGGAATCCTTAGCTTGCTGTCCCTCCTTCAACACCCATCTCAACATCCGTTACGGGCTCCGTCCAGATTCCATGGGGAAAAACAACAACCCGTTACTTC CCTCGGATCGAATCGGATTCAGAGATCGCCGGAGTCTCAGAAACAGAGTCACTTCCTCTGTTCGTGCGCAAGCTTCGATCTGTGTGAGCAGAAGTCGTAG GTGGTGGGAGGAAAAAGCCGCCGTGAAGAAGCCAAACATGGTGGAAATCCAGTCAGCTCAGCAGCTGGTGGATACGCTACAATGCGCCGGGGATAGATTG GTAATCATTGGTTTCTACTCCCCTGGCTGCGGCGGCTGTCGGACTCTCCATCCCAAGATCTGCCAAATAGCGGAGTTGAATCCGAATGCGATGTTCTTGA AAGTGAATTTCGAGGAGATGAAGACAATGTGTGAATGTCTCAACATCCGCGTCCTCCCTTTCTTCAGATTCTACCGTGGCTCCGACGGCCGCCTCTGTAG CTTCAGCTGTACCACTTCCACTATCAAGAAATTCAAAGATGCGATCGCCAAGCATTCTACGGATCGGTGCAGTATTGGTCCGGCCAAGGGTTTGGAGGAG TCGGAGATTCTAAGATTGGTGGACAGCAGGCTGATTCCGAAGAAGAATTCTCCGGCGGCGGCGCCCAAGGAGGAGGATTTAATGGTTGTAGGAAGCGCCG AAAAGGGTTTGGTATGGAGTGGTGAGAATGAATTAATAAGCCAGGTTGGGATAGGGAAAGTATCATTATTAGCTCCTCTGTTATTGTAG
AA sequence Show only first row Show all	>Lus10019087 pacid=23141748 polypeptide=Lus10019087 locus=Lus10019087.g ID=Lus10019087.BGIv1.0 annot-version=v1.0 MESLACCPSFNTHLNIRYGLRPDSMGKNNNPLLPSDRIGFRDRRSLRNRVTSSVRAQASICVSRSRRWWEEKAAVKKPNMVEIQSAQQLVDTLQCAGDRL VIIGFYSPGCGGCRTLHPKICQIAELNPNAMFLKVNFEEMKTMCECLNIRVLPFFRFYRGSDGRLCSFSCTTSTIKKFKDAIAKHSTDRCSIGPAKGLEE SEILRLVDSRLIPKKNSPAAAPKEEDLMVVGSAEKGLVWSGENELISQVGIGKVSLLAPLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10019087 [exp]	0	1
AT1G11380			PLAC8 family protein (.1)		Lus10018410 [exp]	1.7	0.9857
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10007247 [exp]	2.0	0.9841
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10006498 [exp]	4.2	0.9813
AT5G62530		ATP5CDH, ALDH12...	ARABIDOPSIS THALIANA DELTA1-PY...		Lus10042174 [exp]	4.5	0.9715
AT3G56200			Transmembrane amino acid trans...		Lus10028165 [exp]	6.3	0.9784
AT5G20250		RS6, DIN10	raffinose synthase 6, DARK IND...		Lus10017516 [exp]	7.0	0.9753
AT4G32480			Protein of unknown function (D...		Lus10011174 [exp]	8.1	0.9754
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	8.2	0.9786
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10028933 [exp]	9.5	0.9719
AT2G32150			Haloacid dehalogenase-like hyd...		Lus10004914 [exp]	10.0	0.9527

Compare expression of checked genes

Lus10019087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.