Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69530 94 / 1e-25 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT2G03090 93 / 4e-25 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT1G26770 92 / 9e-25 ATHEXPALPHA1.1, AT-EXP10, ATEXP10, ATEXPA10 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) AT2G40610 90 / 4e-24 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT5G56320 88 / 2e-23 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT3G29030 87 / 7e-23 ATEXP5, ATHEXPALPHA1.4, ATEXPA5 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) AT5G05290 83 / 2e-21 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT5G02260 79 / 8e-20 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT2G37640 72 / 3e-17 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT1G20190 71 / 1e-16 ATHEXPALPHA1.14, ATEXP11, ATEXPA11 EXPANSIN 11, expansin 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034465 [exp] 110 / 2e-31 AT2G03090 273 / 5e-92 EXPANSIN 15, expansin A15 (.1) Lus10026614 [exp] 94 / 9e-26 AT1G69530 431 / 7e-155 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10034227 [exp] 91 / 2e-24 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10033011 [exp] 89 / 2e-23 AT3G29030 389 / 2e-138 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) Lus10036763 [exp] 87 / 1e-22 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10037164 [exp] 87 / 1e-22 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10029038 [exp] 86 / 1e-22 AT2G40610 418 / 6e-150 expansin A8 (.1) Lus10008603 [exp] 84 / 7e-22 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10020257 [exp] 84 / 1e-21 AT2G03090 349 / 2e-122 EXPANSIN 15, expansin A15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G001100 [exp] 93 / 2e-25 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.004G123200 [exp] 92 / 4e-25 AT1G69530 334 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.017G085300 [exp] 90 / 3e-24 AT1G26770 355 / 5e-125 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) Potri.008G088300 [exp] 90 / 4e-24 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.010G167200 [exp] 90 / 5e-24 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.013G060800 [exp] 89 / 7e-24 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1) Potri.003G223501 [exp] 86 / 1e-23 AT5G56320 192 / 4e-63 EXPANSIN 14, expansin A14 (.1) Potri.013G154700 [exp] 86 / 1e-22 AT2G40610 348 / 2e-122 expansin A8 (.1) Potri.019G057500 [exp] 84 / 1e-21 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.006G108000 [exp] 81 / 1e-20 AT2G40610 379 / 2e-134 expansin A8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019088 pacid=23141732 polypeptide=Lus10019088 locus=Lus10019088.g ID=Lus10019088.BGIv1.0 annot-version=v1.0 ATGTCGAGGAACTGGGGGCAGAATTGGCAGAGCAACTCTTTCTTGAACGGACAGAGTCTTTCGTTTAAGATCACTACTAGCGACGGCCGTACAATTCTGT CTAACGATGTTGCTCCGGCTGGGTGGTCTTTCGGCCAGACTTACACCGGCGTCCAGTTCCCCTGA
AA sequence Show only first row Show all	>Lus10019088 pacid=23141732 polypeptide=Lus10019088 locus=Lus10019088.g ID=Lus10019088.BGIv1.0 annot-version=v1.0 MSRNWGQNWQSNSFLNGQSLSFKITTSDGRTILSNDVAPAGWSFGQTYTGVQFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10019088 [exp]	0	1
AT2G03090		ATHEXPALPHA1.3,...	EXPANSIN 15, expansin A15 (.1)		Lus10034465 [exp]	1.0	0.9458
AT3G57950			unknown protein		Lus10021036 [exp]	2.2	0.8755
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10025829 [exp]	9.7	0.8862
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Lus10030359 [exp]	16.6	0.7825
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10005101 [exp]	24.5	0.8313
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10034304 [exp]	25.0	0.8781
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10021040 [exp]	31.1	0.8658
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Lus10021126 [exp]	32.7	0.8642
AT5G02970			alpha/beta-Hydrolases superfam...		Lus10026484 [exp]	34.5	0.8545
AT1G16900			Alg9-like mannosyltransferase ...		Lus10042853 [exp]	45.6	0.8213

Compare expression of checked genes

Lus10019088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.