Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18750 251 / 4e-80 MADS AGL65, AGL102 AGAMOUS-like 65 (.1.2) AT2G03060 222 / 6e-69 MADS AGL30 AGAMOUS-like 30 (.1.2) AT1G69540 199 / 2e-60 MADS AGL94 AGAMOUS-like 94 (.1) AT1G77980 105 / 2e-25 MADS AGL66 AGAMOUS-like 66 (.1) AT1G22130 99 / 5e-23 MADS AGL104 AGAMOUS-like 104 (.1) AT1G77950 96 / 2e-22 MADS AGL67 AGAMOUS-like 67 (.1.2) AT5G65070 64 / 2e-11 MADS FCL4, MAF4, AGL69 MADS AFFECTING FLOWERING 4, AGAMOUS-like 69, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G26320 59 / 1e-10 MADS AGL33 AGAMOUS-like 33 (.1) AT3G57230 61 / 2e-10 MADS AGL16 AGAMOUS-like 16 (.1.2) AT5G20240 60 / 3e-10 MADS PI, PISTILLATA PISTILLATA, K-box region and MADS-box transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034464 [exp] 628 / 0 AT1G18750 281 / 1e-88 AGAMOUS-like 65 (.1.2) Lus10036761 [exp] 267 / 2e-86 AT2G03060 284 / 5e-93 AGAMOUS-like 30 (.1.2) Lus10026613 [exp] 267 / 5e-86 AT2G03060 308 / 2e-102 AGAMOUS-like 30 (.1.2) Lus10030450 [exp] 255 / 3e-82 AT2G03060 301 / 4e-100 AGAMOUS-like 30 (.1.2) Lus10037166 [exp] 254 / 3e-81 AT2G03060 282 / 2e-92 AGAMOUS-like 30 (.1.2) Lus10022506 [exp] 115 / 1e-28 AT1G22130 277 / 1e-91 AGAMOUS-like 104 (.1) Lus10016810 [exp] 100 / 1e-23 AT1G22130 239 / 5e-77 AGAMOUS-like 104 (.1) Lus10024823 [exp] 81 / 8e-17 AT1G22130 142 / 3e-40 AGAMOUS-like 104 (.1) Lus10018714 [exp] 71 / 1e-13 AT1G22130 122 / 7e-33 AGAMOUS-like 104 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G088200 [exp] 275 / 2e-89 AT2G03060 297 / 4e-98 AGAMOUS-like 30 (.1.2) Potri.010G167300 [exp] 274 / 8e-89 AT2G03060 259 / 4e-83 AGAMOUS-like 30 (.1.2) Potri.007G087500 [exp] 109 / 1e-26 AT1G22130 229 / 9e-73 AGAMOUS-like 104 (.1) Potri.002G092300 [exp] 99 / 8e-23 AT1G22130 313 / 1e-105 AGAMOUS-like 104 (.1) Potri.007G120002 [exp] 65 / 5e-13 AT1G77980 97 / 1e-25 AGAMOUS-like 66 (.1) Potri.002G079000 [exp] 64 / 1e-11 AT5G20240 238 / 2e-80 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Potri.005G182200 [exp] 62 / 3e-11 AT5G20240 244 / 2e-82 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Potri.019G077200 [exp] 59 / 4e-10 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.001G251400 [exp] 59 / 5e-10 AT5G60440 112 / 3e-30 AGAMOUS-like 62 (.1) Potri.013G104900 [exp] 58 / 1e-09 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10019089 pacid=23141765 polypeptide=Lus10019089 locus=Lus10019089.g ID=Lus10019089.BGIv1.0 annot-version=v1.0 ATGGGAAGGGTGAAGCTGAAGATTAAGAGATTGGAGAATACCAGTAATAGGCAAGTGACTTACTCCAAACGGAGGCATGGAATACTGAAAAAGGCTAAGG AATTATCTATACTATGCGACATTGATATTCTCCTTCTCATGTTTTCTCCCACCGGAAGGCCTACCTTATTCAATGGAGAGCGCGGCATTGAAGACGTCAT TGCGAAATTTGCTCAACTGACTCCTCAGGACAGAGCTAAACGGAAAATGGAGAGCCTTGAAACTTTGAAGAAGACCTTCAAGAAGTTGGACCATGATGTG AATATACAAGCGTTTTTTGGTGCAAGGGGTCAAACCGTTGAGGAGGTAACTGATCAAGTCAGGCTAATGCAAGCTGAGGTTACAGAATTGGACAGGAGAC TGAGCTATTGGATGGATCCAGAGAAAATTGATAGCATAGAACAGATTCAGCAAATGGAAGCTTCAATTAGGGAATCACTTAGCCGAATCAGTCTGCATAA GGAAAACATAAAAAATCACCAACTTATGTCTTTAGATTGCTCTAGCCAGTTTCAGAACGGACTGCAATTGCCTCTGATGATGAACGGTCTGCACAATACA AATTCTCTGTCTTGGCTTGTAAACAATGGTAACCAAAATTTCGTCCTAACCAATGAGCCAAATGCATTGCATCACAGTTCCATGATGCATAACTACAAAG ATGATCACAGAGATATGGAATGCTCCACGGAATCCTCAGCACCTGGCTGTCATGGTTTCTTCAGTTCGGAGAAACAACCCGAGATAGGAAACCCTGCCTT GATGGACAACATGGGACAGCAAGCCGGCCATTTTAATGAATTAGGTAGTAGTTCGCGGTTGAATTTACAACTCGGCGAACAGTTTCCTTACCATGGATAT GGTAGTTTGTGTTTAGCAGCAGACGATAAGAAGTTCGAGCTGCAGATGGGGAACAATTTAAACGAAAACCACAACGTTTATGAAGTTAATAACAACAATG AGGTTGAAATTCCTAGACCCATGTATGAGGATGGGCATAATAACTGGATACCTGCTGTCGATGGACCTTCTGGTGTCGCAATCTTAGACCAGAACCCTCC TTACCCTCAGGTACAAGAACCACACTTTTCCTATTCTGAATGTTACTCTGCGAATAACTAA
AA sequence Show only first row Show all	>Lus10019089 pacid=23141765 polypeptide=Lus10019089 locus=Lus10019089.g ID=Lus10019089.BGIv1.0 annot-version=v1.0 MGRVKLKIKRLENTSNRQVTYSKRRHGILKKAKELSILCDIDILLLMFSPTGRPTLFNGERGIEDVIAKFAQLTPQDRAKRKMESLETLKKTFKKLDHDV NIQAFFGARGQTVEEVTDQVRLMQAEVTELDRRLSYWMDPEKIDSIEQIQQMEASIRESLSRISLHKENIKNHQLMSLDCSSQFQNGLQLPLMMNGLHNT NSLSWLVNNGNQNFVLTNEPNALHHSSMMHNYKDDHRDMECSTESSAPGCHGFFSSEKQPEIGNPALMDNMGQQAGHFNELGSSSRLNLQLGEQFPYHGY GSLCLAADDKKFELQMGNNLNENHNVYEVNNNNEVEIPRPMYEDGHNNWIPAVDGPSGVAILDQNPPYPQVQEPHFSYSECYSANN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18750	MADS	AGL65, AGL102	AGAMOUS-like 65 (.1.2)		Lus10019089 [exp]	0	1
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10026832 [exp]	2.8	0.8331
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10012931 [exp]	3.7	0.8620
AT3G28760			unknown protein		Lus10005250 [exp]	4.9	0.8489
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10001121 [exp]	6.9	0.8373
AT1G73090			unknown protein		Lus10037331 [exp]	7.5	0.8232
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10003245 [exp]	8.8	0.8463
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10027219 [exp]	11.2	0.8417
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Lus10019399 [exp]	13.7	0.8312
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Lus10035985 [exp]	14.0	0.8028
AT2G45280		ATRAD51C	RAS associated with diabetes p...		Lus10000790 [exp]	14.2	0.8024

Compare expression of checked genes

Lus10019089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.