Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47490 199 / 2e-63 HNH endonuclease (.1.2.3) AT1G18680 87 / 8e-21 HNH endonuclease domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034462 [exp] 419 / 2e-148 AT3G47490 239 / 8e-78 HNH endonuclease (.1.2.3) Lus10015728 [exp] 97 / 9e-25 AT1G18680 245 / 8e-84 HNH endonuclease domain-containing protein (.1) Lus10003480 [exp] 97 / 2e-24 AT1G18680 246 / 2e-84 HNH endonuclease domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G004200 [exp] 209 / 4e-68 AT3G47490 241 / 2e-81 HNH endonuclease (.1.2.3) Potri.012G067700 [exp] 99 / 2e-25 AT1G18680 248 / 9e-85 HNH endonuclease domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019092 pacid=23141756 polypeptide=Lus10019092 locus=Lus10019092.g ID=Lus10019092.BGIv1.0 annot-version=v1.0 ATGGAAATAGCTGCAACGGTAGGAGCATTGCACAAATTCCCGCCGCCGCCGGCGGAGGAGGAGAGGCAATTATCGCCGGTGACAGACCATACGTGGCACA GAACTCCCACAATCATGGAACACCAACCCAAGCTCAACAAGCAATTTGGTTTAATATCCGAATCGGTTTCCACTTCGAACCCGAGTTCAACCAGAACCAA ATTCGCAGCCTTTACTTTCCCCAACGCTATCCTAAACCCCAACTCTGACAACGACCAGATGAAGCCAACCAAGAGGCGCAACCGTCATTCTTCGCCGGCT AGATCACCGAAACCCACCGCCGATTTCCCCTCCTCCGACACATCCCCCCGACGGCGATCCCCAGCCGCATCGCTGGTTGAAGGCGAGCTCGCCTCGAATC GCAACACAATTGCTCTCTTCCATGACCTTCAGATTTCGGAACACTACTTCAGCTCAGTCCCTGAGCCCAGGAGCTTCCCCAACAGCGTGAAGCTTCAGTG CTGGGAGAAGGCCGAGAAGGTGAAGGGTCGTGACCCGGCCCGGTGGCGACGCGACCCGCTCGGTAACATTGTGTTCAGGAAGCTCGTTGGTTGTCCTGGC TGTTTGTGTCATGATTATGACCACATTGTGCCCTACTCCAAGGTGACAGCTAATCGATCAAAGGGGAACCGAATGGAGCTATCCAAAGCTGAGCTCATCA GCAGGAGTAACTACTGCCGCGTTTCAGGTCGTGATATGGATCTCGTAGAACTATTGTCGTACGGCAATGTTCAGCATACCCAGGATTCAGGAGGATGCAG GATCCAATAA
AA sequence Show only first row Show all	>Lus10019092 pacid=23141756 polypeptide=Lus10019092 locus=Lus10019092.g ID=Lus10019092.BGIv1.0 annot-version=v1.0 MEIAATVGALHKFPPPPAEEERQLSPVTDHTWHRTPTIMEHQPKLNKQFGLISESVSTSNPSSTRTKFAAFTFPNAILNPNSDNDQMKPTKRRNRHSSPA RSPKPTADFPSSDTSPRRRSPAASLVEGELASNRNTIALFHDLQISEHYFSSVPEPRSFPNSVKLQCWEKAEKVKGRDPARWRRDPLGNIVFRKLVGCPG CLCHDYDHIVPYSKVTANRSKGNRMELSKAELISRSNYCRVSGRDMDLVELLSYGNVQHTQDSGGCRIQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47490			HNH endonuclease (.1.2.3)		Lus10019092 [exp]	0	1
AT1G60550		ECHID, DHNS	enoyl-CoA hydratase/isomerase ...		Lus10029142 [exp]	3.6	0.8798
AT5G66550			Maf-like protein (.1)		Lus10040204 [exp]	11.0	0.8286
AT5G27290			unknown protein		Lus10018966 [exp]	13.4	0.8616
AT1G60550		ECHID, DHNS	enoyl-CoA hydratase/isomerase ...		Lus10013023 [exp]	15.2	0.8456
AT1G53250			unknown protein		Lus10028136 [exp]	16.9	0.8471
AT1G74710		ATICS1, SID2, E...	SALICYLIC ACID INDUCTION DEFIC...		Lus10023622 [exp]	18.0	0.8437
AT5G14370			CCT motif family protein (.1)		Lus10014886 [exp]	21.2	0.8210
AT5G58070		ATTIL	temperature-induced lipocalin ...		Lus10019048 [exp]	22.2	0.8191
AT4G15510			Photosystem II reaction center...		Lus10000352 [exp]	26.9	0.8437
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10020046 [exp]	27.1	0.8150

Compare expression of checked genes

Lus10019092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.