Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47500 315 / 5e-103 DOF CDF3, AtDof3,3 cycling DOF factor 3 (.1) AT5G39660 254 / 2e-79 DOF CDF2, AtDof5. 2 cycling DOF factor 2 (.1.2) AT5G62430 232 / 6e-73 DOF CDF1, AtDof5,5 cycling DOF factor 1 (.1) AT1G69570 179 / 1e-51 DOF AtDof1,10 Dof-type zinc finger DNA-binding family protein (.1) AT1G26790 164 / 6e-46 DOF AtDof1,3 Dof-type zinc finger DNA-binding family protein (.1) AT1G29160 128 / 9e-35 DOF AtDof1. 5 Dof-type zinc finger DNA-binding family protein (.1) AT2G34140 123 / 5e-33 DOF AtDof2. 3 Dof-type zinc finger DNA-binding family protein (.1) AT5G60850 106 / 2e-25 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT3G61850 105 / 3e-25 DOF DAG1, AtDof3,7 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) AT3G50410 104 / 3e-25 DOF OBP1, AtDof3. 4 OBF binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034461 [exp] 827 / 0 AT3G47500 331 / 2e-109 cycling DOF factor 3 (.1) Lus10036760 [exp] 212 / 1e-64 AT5G39660 200 / 1e-60 cycling DOF factor 2 (.1.2) Lus10037167 [exp] 206 / 1e-61 AT5G39660 214 / 5e-65 cycling DOF factor 2 (.1.2) Lus10020315 [exp] 197 / 3e-58 AT5G62430 201 / 7e-60 cycling DOF factor 1 (.1) Lus10020314 [exp] 195 / 6e-58 AT5G62430 196 / 8e-59 cycling DOF factor 1 (.1) Lus10005677 [exp] 185 / 2e-53 AT5G62430 199 / 3e-59 cycling DOF factor 1 (.1) Lus10013905 [exp] 127 / 2e-34 AT2G34140 171 / 9e-55 Dof-type zinc finger DNA-binding family protein (.1) Lus10001896 [exp] 125 / 6e-34 AT2G34140 172 / 3e-55 Dof-type zinc finger DNA-binding family protein (.1) Lus10010113 [exp] 106 / 4e-25 AT3G61850 194 / 5e-60 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G084600 [exp] 353 / 4e-117 AT5G39660 314 / 3e-102 cycling DOF factor 2 (.1.2) Potri.004G121800 [exp] 348 / 4e-115 AT3G47500 293 / 5e-94 cycling DOF factor 3 (.1) Potri.008G087800 [exp] 338 / 3e-111 AT3G47500 249 / 2e-77 cycling DOF factor 3 (.1) Potri.010G167600 [exp] 328 / 1e-107 AT3G47500 257 / 2e-80 cycling DOF factor 3 (.1) Potri.013G066700 [exp] 266 / 3e-83 AT3G47500 157 / 2e-42 cycling DOF factor 3 (.1) Potri.019G040700 [exp] 261 / 1e-81 AT5G39660 154 / 1e-41 cycling DOF factor 2 (.1.2) Potri.004G056900 [exp] 123 / 3e-33 AT1G29160 186 / 7e-61 Dof-type zinc finger DNA-binding family protein (.1) Potri.011G065900 [exp] 123 / 3e-33 AT1G29160 155 / 7e-49 Dof-type zinc finger DNA-binding family protein (.1) Potri.014G036600 [exp] 107 / 4e-26 AT1G47655 128 / 2e-36 Dof-type zinc finger DNA-binding family protein (.1) Potri.005G134200 [exp] 107 / 9e-26 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10019093 pacid=23141734 polypeptide=Lus10019093 locus=Lus10019093.g ID=Lus10019093.BGIv1.0 annot-version=v1.0 ATGCAGGAAATTCACCTCCAAACTCCTACTAAAGACCCCGCCATCAAGCTCTTCGGCAAGAACTTGCCCTTTCATTCCGACCCCGCCGCTGATCCTCTTG CGATCTCCGCCGGCGACCCCTCCTCCTCGGATGGAAACAGAGGAGAAGATGATAAGAAAACAAACAAGGATTGCGTTCCTGATGGAGAAGATACAGCAGA TCAGGGCGATGGCGCTATGGACGATGTGGAAGCATCAGCTGCCACTGATAACACAAAAACGACTTCCGTCAGTGAAGAAGACTCGTCGAAATCCAAGAGT TCCAAAGCAGGAGATAAAGAGCAGGGAGACGCAGCATATACTTCAGGGGAGAAGCCAGTTCTGAAGAAGCCTGATAAAATACTGCCATGCCCTCGTTGTA ACAGCATGGACACTAAGTTCTGTTACTACAACAACTACAACGTCAACCAGCCTCGCCATTTCTGCAAGGCCTGCCAGAGGTATTGGACTGCTGGTGGAAC CATGAGGAATGTTCCTGTAGGGGCTGGCCGTCGAAAGAACAAGAACTCGTCGACTCATTACAGGCACATAACAATCTCCGAGGCGCTTGAGGCAGCTCGT CTCGAAGCACCTAATGACAGTACAAACCATTTACAGACAACAAATGGTAGAGTCCTCAGCTTTGGAGTGGACACCACACCCGTTTGTGATTCCATGGCTT CTCTGCTTAACCTGGCAGATCCTAAGAAGGTTTTGAATAGGTTCCCTAGTTCTGCTGATAAACCGAAAGTGGGAGACCAAAATGGGGATGCTTGTTCTAA TGCGTCGATGGAGGAAGGGGGGAAGCCTTGTACGCAGGAACAACCTTTTGTTCAAAACAACATCAATGGATTTAGTCCTCATCCTATACCATGCTTGCCT GGTATTCCCTGGCATTATCCCTGGAATCCAATGATGCCTCAACTGGCATTCTGCCCTCCAGGATTTGCTATGTCTTTCTATCCCCCTCCTCCTCATCATC CTCATGCTGCTTATTGGAACAACATTCCAGTGCAATCCCCTCAGTATTCATCTTCATCATCAAATGACAAGGCCACTTACTCGTCCGGTCCTATTTCTCC CACTCTAGGGAAACATTCAAGGGAAGCAGAGGCGGTTAAACCAGAAGACTTGGAGAAAGAAGAGCTGTCTAGACACAAGAACGGGAGTAGTGTTCTGGTT CCAAAAATCCTCAGAATTGATGATCCAACCGAAGCAGCAAAGAGCTCCATATGGGCTACCCTCGGAATCAAGAACGAATCCCTTGGTTCAGGAGGGTTGT TCAAGGGCTTCCAGAGAAAGGGCGACGAAAAGAACCACGTTGCTGAAACATCTCCGGTATTGGTTGCGAATCCTGCAGCCCTGTCTCGGTCAATGAAGTT CCGCGAGAGCTCCTAA
AA sequence Show only first row Show all	>Lus10019093 pacid=23141734 polypeptide=Lus10019093 locus=Lus10019093.g ID=Lus10019093.BGIv1.0 annot-version=v1.0 MQEIHLQTPTKDPAIKLFGKNLPFHSDPAADPLAISAGDPSSSDGNRGEDDKKTNKDCVPDGEDTADQGDGAMDDVEASAATDNTKTTSVSEEDSSKSKS SKAGDKEQGDAAYTSGEKPVLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSSTHYRHITISEALEAAR LEAPNDSTNHLQTTNGRVLSFGVDTTPVCDSMASLLNLADPKKVLNRFPSSADKPKVGDQNGDACSNASMEEGGKPCTQEQPFVQNNINGFSPHPIPCLP GIPWHYPWNPMMPQLAFCPPGFAMSFYPPPPHHPHAAYWNNIPVQSPQYSSSSSNDKATYSSGPISPTLGKHSREAEAVKPEDLEKEELSRHKNGSSVLV PKILRIDDPTEAAKSSIWATLGIKNESLGSGGLFKGFQRKGDEKNHVAETSPVLVANPAALSRSMKFRESS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Lus10019093 [exp]	0	1
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Lus10034461 [exp]	1.0	0.9217
AT2G46790		TL1, APRR9	TOC1-LIKE PROTEIN 1, Arabidops...		Lus10015571 [exp]	1.4	0.9031
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10010100 [exp]	4.0	0.8786
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10032934 [exp]	4.2	0.8520
AT3G12320			unknown protein		Lus10008671 [exp]	5.5	0.8722
AT3G55140			Pectin lyase-like superfamily ...		Lus10024439 [exp]	6.2	0.8906
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10024276 [exp]	7.3	0.8709
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10030857 [exp]	10.3	0.7714
AT3G53000		ATPP2-A15	phloem protein 2-A15 (.1)		Lus10008642 [exp]	11.0	0.8319
AT5G06980			unknown protein		Lus10026150 [exp]	12.7	0.8232

Compare expression of checked genes

Lus10019093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.