Plant FIBer expression Database

Lus10019094 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G47510 51 / 7e-09 unknown protein
AT1G74458 42 / 2e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034460
[exp]
99 / 2e-27 ND /
Lus10031340
[exp]
38 / 0.0004 ND 34 / 0.002
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G062300
[exp]
66 / 3e-14 AT3G47510 53 / 1e-10 unknown protein
PFAM info
Representative CDS sequence
>Lus10019094 pacid=23141796 polypeptide=Lus10019094 locus=Lus10019094.g ID=Lus10019094.BGIv1.0 annot-version=v1.0
ATGGCGGCAGCTCCTACGAGACCATTTCGGTCGGTCTTCTTCTTAGTTGCGCTCATGGGGATTGTTTACGTTCTAATCCTCTGCCCCGATATAACTACGA
ATGCCGCCCCTGTTACAAGAAGCGGGAGATTAGCTCTGCGGCAGGATCAACAAGCTGTTGTATTACCGGAGATCACAAATTATCGGGGGGTGAAAGAAGA
AACGATTAGTATGGATGGGGAAGAAGGTGCGGCGATAATGGTGCGGCGGCGGACGGCGGTGGAGCTAAGCATCATGACCGATTTGTTTGGCTTGATTTTT
ATCGCAGGAATCGGCAGATTAATTCTGCAGCAGGATCAACAAGCTGTTGTAATTCCGGAGATCACTAGCCACCAGGAGGTGAAAGAAGAAACGATTAGTA
TGGATGGGGAAGAAGGTGCGGCGATAATGGTGCGGCGGCGGACGGCGGTGGAGCTAGATGACTATCCGGGATCTGGAGCCAACAACCGTCACACTCCACG
TCAACAGTTCGGAAGATGCGTTGACTGTTGA
AA sequence
>Lus10019094 pacid=23141796 polypeptide=Lus10019094 locus=Lus10019094.g ID=Lus10019094.BGIv1.0 annot-version=v1.0
MAAAPTRPFRSVFFLVALMGIVYVLILCPDITTNAAPVTRSGRLALRQDQQAVVLPEITNYRGVKEETISMDGEEGAAIMVRRRTAVELSIMTDLFGLIF
IAGIGRLILQQDQQAVVIPEITSHQEVKEETISMDGEEGAAIMVRRRTAVELDDYPGSGANNRHTPRQQFGRCVDC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G47510 unknown protein Lus10019094
[exp]
0 1
AT1G14220 Ribonuclease T2 family protein... Lus10027978
[exp]
5.1 0.8611
AT5G58350 ZIK2, WNK4 with no lysine (K) kinase 4 (.... Lus10042223
[exp]
6.0 0.8621
AT5G58350 ZIK2, WNK4 with no lysine (K) kinase 4 (.... Lus10008590
[exp]
10.6 0.8441
AT5G12950 Putative glycosyl hydrolase of... Lus10031258
[exp]
14.9 0.8572
AT4G24240 WRKY ATWRKY7, WRKY7 WRKY DNA-binding protein 7 (.1... Lus10010053
[exp]
14.9 0.7781
AT1G03220 Eukaryotic aspartyl protease f... Lus10041225
[exp]
15.5 0.7844
AT5G65660 hydroxyproline-rich glycoprote... Lus10042927
[exp]
15.9 0.8082
AT5G05760 ATSYP31, ATSED5... T-SNARE SED 5, syntaxin of pla... Lus10028277
[exp]
18.2 0.7896
AT1G49740 PLC-like phosphodiesterases su... Lus10014072
[exp]
20.0 0.7970
AT4G00350 MATE efflux family protein (.1... Lus10014760
[exp]
20.2 0.8428

Lus10019094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.