Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74460 507 / 0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 283 / 3e-93 SGNH hydrolase-type esterase superfamily protein (.1) AT5G15720 225 / 1e-70 GLIP7 GDSL-motif lipase 7 (.1) AT5G08460 223 / 2e-69 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 222 / 2e-69 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 221 / 5e-69 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 220 / 1e-68 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G71250 213 / 4e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 204 / 9e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 203 / 2e-62 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034459 [exp] 640 / 0 AT1G74460 546 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10001643 [exp] 567 / 0 AT1G74460 530 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10021664 [exp] 566 / 0 AT1G74460 526 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039877 [exp] 281 / 1e-92 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10018641 [exp] 271 / 2e-88 AT5G37690 516 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10016918 [exp] 236 / 1e-74 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005236 [exp] 233 / 7e-74 AT2G23540 390 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005238 [exp] 229 / 3e-72 AT2G23540 369 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016775 [exp] 226 / 1e-70 AT2G23540 592 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G068700 [exp] 527 / 0 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G130100 [exp] 292 / 4e-97 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G086700 [exp] 281 / 1e-92 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.013G102500 [exp] 231 / 4e-73 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.008G104600 [exp] 228 / 8e-72 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.007G036300 [exp] 228 / 1e-71 AT2G23540 554 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G076600 [exp] 225 / 1e-70 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.011G089700 [exp] 218 / 6e-68 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G067600 [exp] 216 / 3e-67 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076500 [exp] 204 / 2e-62 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10019095 pacid=23141788 polypeptide=Lus10019095 locus=Lus10019095.g ID=Lus10019095.BGIv1.0 annot-version=v1.0 ATGCAGACCTCCATAAGTATAACACTAGTACTAGTACTAGTCCTCAGCATCCCTGGCTGCCAATGCAAGACAGTTCAGTTCATATTCGGAGACTCCCTCT CCGACGTTGGCAACAACAATAACCTCCCCAAGAGCCTCGCTCAGGCCGCCTTGCCCTGGTACGGTATCGACTTTGGTAATGGCCTCCCTAATGGCAGGTT CACCAATGGTCGGACCGTCGCTGACATTATCGGGGACCAAACTGGACTTCCGAGGCCACCTGCGTTCCTGGACTCGTCCTTGTCGGAAGATGTTATATTG GACCAAGGTGTCAATTTTGCTTCCGGTGGCGGCGGCATCTTGAACGAGACCGGTGGACTCTTTATACAGAGGTTTTCTCTGAGCAGGCAAATTGAGCTGT TCCAAGGAATTCAGCAGCTTATAGTGGACAAGATTGGCAAAGAGGAAGCTGACAAGTTCTTCCTGAAATCCAAGTACGTTGTGGCTTTGGGAAGCAACGA CTTCATCAACAACTACTTGATGCCTGTCTACAGTGATTCCTGGACCTATAATGACCAGACTTTCATCGATTACCTCATGGAAACTCTTGGCTCCCAACTC AAGTTGTTGCATAGTTTGGGTGCGAGGGAGTTGATAGTGTTCGGATTAGGACCGATGGGTTGCATCCCGCTCCAAAGGGTGCTAAGCTCGTCAGGAGGGT GCCAAGAGCGAACCAACAAGCTAGCTCTAAGTTTCAACAAAGCTTCCAACAAGCTCATCACCACCCTCTCCACCCAGCTACCTAATGCCACCTACCAATT CGGCGATGCTTACGATGTTGTCAACAATTTGATCTCCAATCCCAAGAAATATGGGTTCAACAATGCGGACTCGCCGTGTTGCTCACTGGGGAGGATAAGG CCGGCGATAACATGCACGCCGGCATCGACACTGTGCAAGGACAGGAGTAAATACGTGTTCTGGGATGAATACCATCCGTCGGATCGAGCCAATGAGATGA TTGCAGATGAGTTGATAAAAAAGTTTGGGTTCTTAGCGGCTCCTCCTCCTTCTTCCTCTACTCCATCCCCCGGCTCGTAA
AA sequence Show only first row Show all	>Lus10019095 pacid=23141788 polypeptide=Lus10019095 locus=Lus10019095.g ID=Lus10019095.BGIv1.0 annot-version=v1.0 MQTSISITLVLVLVLSIPGCQCKTVQFIFGDSLSDVGNNNNLPKSLAQAALPWYGIDFGNGLPNGRFTNGRTVADIIGDQTGLPRPPAFLDSSLSEDVIL DQGVNFASGGGGILNETGGLFIQRFSLSRQIELFQGIQQLIVDKIGKEEADKFFLKSKYVVALGSNDFINNYLMPVYSDSWTYNDQTFIDYLMETLGSQL KLLHSLGARELIVFGLGPMGCIPLQRVLSSSGGCQERTNKLALSFNKASNKLITTLSTQLPNATYQFGDAYDVVNNLISNPKKYGFNNADSPCCSLGRIR PAITCTPASTLCKDRSKYVFWDEYHPSDRANEMIADELIKKFGFLAAPPPSSSTPSPGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10019095 [exp]	0	1
AT1G68850			Peroxidase superfamily protein...		Lus10029094 [exp]	1.7	0.9647
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10008500 [exp]	2.2	0.9549
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10040687 [exp]	3.2	0.9634
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10026331 [exp]	3.5	0.9587
AT1G68850			Peroxidase superfamily protein...		Lus10013065 [exp]	3.9	0.9603
AT2G48140		EDA4	embryo sac development arrest ...		Lus10014683 [exp]	8.1	0.9502
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10018217 [exp]	8.5	0.9421
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10034811 [exp]	8.8	0.9332
					Lus10003550 [exp]	9.9	0.9357
AT1G49960			Xanthine/uracil permease famil...		Lus10033773 [exp]	10.2	0.9430

Compare expression of checked genes

Lus10019095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.