Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47520 575 / 0 pNAD-MDH, MDH plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) AT2G22780 405 / 7e-141 PMDH1 peroxisomal NAD-malate dehydrogenase 1 (.1) AT1G53240 403 / 5e-140 mMDH1 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) AT3G15020 401 / 3e-139 mMDH2 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) AT5G09660 382 / 6e-132 PMDH2 peroxisomal NAD-malate dehydrogenase 2 (.1.2.3.4) AT3G53910 109 / 5e-29 malate dehydrogenase-related (.1) AT4G17260 55 / 4e-08 Lactate/malate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034458 [exp] 796 / 0 AT3G47520 572 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10021666 [exp] 632 / 0 AT3G47520 542 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10000275 [exp] 627 / 0 AT3G47520 543 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10017939 [exp] 412 / 1e-143 AT1G53240 578 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10038323 [exp] 404 / 4e-140 AT3G15020 578 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Lus10039642 [exp] 397 / 3e-137 AT2G22780 617 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10012459 [exp] 377 / 2e-129 AT2G22780 578 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10011587 [exp] 375 / 3e-126 AT2G22780 547 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10013680 [exp] 364 / 5e-125 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G102000 [exp] 672 / 0 AT3G47520 591 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.004G112800 [exp] 657 / 0 AT3G47520 583 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G101900 [exp] 657 / 0 AT3G47520 580 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.011G096300 [exp] 414 / 2e-144 AT3G15020 541 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.001G376500 [exp] 409 / 3e-142 AT3G15020 523 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.007G009100 [exp] 407 / 3e-141 AT2G22780 612 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.004G054200 [exp] 405 / 1e-140 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.009G081600 [exp] 403 / 7e-140 AT2G22780 602 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.001G287400 [exp] 397 / 3e-137 AT2G22780 588 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.017G152000 [exp] 239 / 9e-77 AT1G53240 277 / 8e-93 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00056 [flax] [poplar] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain CL0341 [flax] [poplar] LDH_C PF02866 [flax] [poplar] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019096 pacid=23141727 polypeptide=Lus10019096 locus=Lus10019096.g ID=Lus10019096.BGIv1.0 annot-version=v1.0 ATGGCCACAACATCAAAACCTACCTTTTCTATTGGATCAACTGTTTCATTTGGTTCTAAAGCAAACCAACTACTACAGCCAAAAGCTTTTGCTGTGAGAT TGAATTCTCAGAAGCAATTTGCTACCTTCAGTGCTCTGAAGTCAACAGGCTCTGTATATGAGTCAGAATCTTCATTCTTCGGCAAAACGAGCTCTGCATT GCAGAATTCATATCCACAAAATCGTGTGAAGGCCACTGAAAGGACGAAGCATCGCCTCAATGCCCAGGCATCTTACAAAGTAGCTGTTCTTGGAGCAGCT GGAGGGATTGGTCAACCTCTTGCATTGCTGGTCAAGATGTCTCCATTGGTTTCTACTCTTAATCTCTATGATATAGCAAATGTAAAGGGTGTTGCTGCTG ACCTTAGCCACTGCAACACTCCTGCACAAGTGTTTGATTTCACTGGTGCTTCTGAGTTGGGCAATTGCTTGAAAGGCGTCGATGTTGTCGTTATCCCTGC TGGAGTGCCAAGAAAGCCTGGAATGACCCGTGACGATCTCTTTAATATCAATGCCAGCATTGTGAAGAGCTTGGTTGAGGCTGTCGCTGATAACTGCCCT GATGCTTTCATCCACATCATCAGCAACCCAGTCAACTCGACTGTACCAATCGCAGCAGAAGTTCTGAAGCAGAAGGGTGTTTATGACCCGAAGAAGCTCT TTGGGGTTTCTACTCTTGATGTTGTGAGGGCAAACACATTCGTTGCTCAGAAGAAGAACCTGAGATTAATTGATGTCGATGTCCCAGTTATCGGAGGCCA TGCTGGGATTACCATCCTTCCTCTTCTATCCAAGGCAAAACCCTCTGTTGCATTCACCGACGAAGAGATCCACGAGCTAACTGTAAGGATTCAAAATGCT GGAACAGAAGTTGTCGATGCAAAAGCAGGTGCTGGATCTGCTACCTTGTCAATGGCTTACGCAGCCGCCAGATTTGTCGAATCGTCTCTACGCGCCCTTG ACGGAGATGCTGATGTGTTCGAGTGTGCTTTTGTGGACTCTAATCTCACCGACCTTCCGTTCTTTGCGTCGAGAATCAAGCTGGGAAAGAAAGGTGTGGA AGCTCTCATTTCGTCAGACCTCCAGGGACTGACCGAGTATGAAGAGAAGGCAGTGGAAGCTCTGAAGCCTGAACTGAAAGCCAGCATTGAGAAGGGCATT AGCTTTGCTCAGAAGCAGTCAGTGGCTTCCTAG
AA sequence Show only first row Show all	>Lus10019096 pacid=23141727 polypeptide=Lus10019096 locus=Lus10019096.g ID=Lus10019096.BGIv1.0 annot-version=v1.0 MATTSKPTFSIGSTVSFGSKANQLLQPKAFAVRLNSQKQFATFSALKSTGSVYESESSFFGKTSSALQNSYPQNRVKATERTKHRLNAQASYKVAVLGAA GGIGQPLALLVKMSPLVSTLNLYDIANVKGVAADLSHCNTPAQVFDFTGASELGNCLKGVDVVVIPAGVPRKPGMTRDDLFNINASIVKSLVEAVADNCP DAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVSTLDVVRANTFVAQKKNLRLIDVDVPVIGGHAGITILPLLSKAKPSVAFTDEEIHELTVRIQNA GTEVVDAKAGAGSATLSMAYAAARFVESSLRALDGDADVFECAFVDSNLTDLPFFASRIKLGKKGVEALISSDLQGLTEYEEKAVEALKPELKASIEKGI SFAQKQSVAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10019096 [exp]	0	1
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10034304 [exp]	1.0	0.9680
AT4G22010		SKS4	SKU5 similar 4 (.1)		Lus10015545 [exp]	2.0	0.9616
AT5G10160			Thioesterase superfamily prote...		Lus10015830 [exp]	2.8	0.9624
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10022772 [exp]	3.7	0.9469
AT3G56130			biotin/lipoyl attachment domai...		Lus10009843 [exp]	3.9	0.9621
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10010924 [exp]	4.9	0.9558
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Lus10042255 [exp]	5.5	0.9597
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10034836 [exp]	6.9	0.9464
AT4G01220		MGP4	male gametophyte defective 4, ...		Lus10002153 [exp]	6.9	0.9402
AT3G20330		PYRB	PYRIMIDINE B (.1)		Lus10013346 [exp]	10.8	0.9499

Compare expression of checked genes

Lus10019096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.