Plant FIBer expression Database

Lus10019097 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G49590 426 / 3e-142 ATG13 autophagy-related 13, Autophagy-related protein 13 (.1.2.3)
AT3G18770 162 / 1e-42 Autophagy-related protein 13 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034457
[exp]
1059 / 0 AT3G49590 460 / 1e-155 autophagy-related 13, Autophagy-related protein 13 (.1.2.3)
Lus10006790
[exp]
193 / 3e-54 AT3G18770 380 / 3e-125 Autophagy-related protein 13 (.1)
Lus10005812
[exp]
171 / 3e-46 AT3G18770 385 / 2e-127 Autophagy-related protein 13 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G004400
[exp]
619 / 0 AT3G49590 402 / 9e-133 autophagy-related 13, Autophagy-related protein 13 (.1.2.3)
Potri.001G309800
[exp]
208 / 1e-58 AT3G18770 434 / 2e-144 Autophagy-related protein 13 (.1)
Potri.019G010700
[exp]
186 / 5e-51 AT3G18770 380 / 3e-124 Autophagy-related protein 13 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0651 Mad2 PF10033 ATG13 Autophagy-related protein 13
Representative CDS sequence
>Lus10019097 pacid=23141833 polypeptide=Lus10019097 locus=Lus10019097.g ID=Lus10019097.BGIv1.0 annot-version=v1.0
ATGGATTTGCACGGGGCGGCTTCTCATTCGGAGTCGGGAAAGCTGGAGCAAGTGGTGTCGCAGTTTCTTTTGAAGAGCTTGCACATTATATTGGATTCCA
GGATCCCTTCTCTTTGTTCTCCACGGGATCGAACTTGTGACTCCATTACTCGAGTCAAGAAGAGTGACAAATGGTTTAATCTGGTACTTGGGGATCGCCC
AGCTGCCCTGGATAATCTGCATTTCTGGCATAGGAATTTGATGGATCCCATGATCATTGACATTATACTTGTTCAGCAAGGGTCAACTACTTCTTCGTCC
GTGGACAATCTGCTTTCTGCTTCACCTGAAAGTGCAGCAGCCACTGAGAGCGTTATAGAGAGGTGGCATGTCCAGTTCGAGTCACCAATAACTTCTGCTT
CCAGACCTGGTGAGGGTTCTGCCTCTTATAAGAAGACGTATAAGAAGTCGATCATATTTCTACGCTCCCTATACCTGCAAATGAGGCTTCTTCCAGCATA
CCGGATCTTTAGACAGCTTAGTTCATCCAGCCAGCCTTATAACTTTGATATCATTTACAAGGTTTCGTCTTTCTCAGAACCATTCTCTAGGGCAGAGGAG
GAAATGATGAAGGAATATAGTTTTGTTCCTATTGAAGCCCTTCCTGGAAGGTTACATGTATCAGTGAGTTACCGTGCTCAGCTTTCCCAGTTCAACCTTC
AGCCTTTGACCACTATGCCTCCAAAGATCATATCAGATTATGTTGGAAGCCCTGCCATTGATCCTCTGAGGTATTTCCCATCTTCTTACAAAGGAGATAG
TGCTATATCTTTCCCCACTAAAGGAATCCACTCCCCTACTTCTGTACCTTTCCAGCGACCACATAGCTGGACGAGTGGCTTCTATAAACCCCCTTCTAAT
ACTGGCAGCCAGCCCTTTGTTGGATCCCCACCAATTTTCCGCATGTCCCCATTGTCATATGATTCTCCATCTCCACCAATGGACAGGATCCAGAGCCTTC
GACGACCGCATCAAAGGACTCCCTTCCAGGATGAATGCCAACTCTCTCCTCCCTTTTCGCCATCTGTCTCCCCTTCTACCCCGACATACTTGAGAAAAAT
TGATAGCCCTAGGCAAATTCATGCCGGTTCAGAGTCTGCACCGGTGACTATTCCATTTCAAATGGCAGGCAGAAGTTCCAGATACATCTCTCCCAACTTT
TCTGATCCTAATAAACATTCTCTGCCACCGTTATCTCCCAGAAGTACACGGAATGATCATTCATCCAATTCAAATGAATCCCCATCTGCAATAAGGTTAA
TGAAGAAATCAGAAGCTTCAAAGCCCGGTGATTTGAGTTATGCTGGTCATAAGGTACTCAGAGATAACAGAGATGATTCAGGGCGGTTTTCGGGATTGTT
ATCTTCTAGGAGTTCTAGTAAATTATCTTTCCAGGACGATATAGATGACTGTGACTTCTCATGTCCTTTTGATGTGGATGATGTCGACACGCCAGACTCC
CAAATCAGTCAGAACCAGGATGGGAAAAGAAGCTTGGAATCGACATCACTGGGTAGGAAATCTCAAGATGCTGCAGTAGGTGTCCTTGTTCATATGTTGC
GGAATGCACCTCCGCTGCGACAAGATTCGAGTTGCTACTCTTCCCATTCGTTGAGAGCCGAAGTAGAAGATGGAGGAGGTTCTGCTACTACTACAGCTTC
TGGGTTCTTTATGGCGAGGCGGACAGCCGATGCATTGGAAGAGCTGAGGAGTTACAGGGAGATGAGGGACCTCCTACTCTCTAAGAGCGGAACCAGAGTG
CTCGCCAGAGAGCCGCCGTAA
AA sequence
>Lus10019097 pacid=23141833 polypeptide=Lus10019097 locus=Lus10019097.g ID=Lus10019097.BGIv1.0 annot-version=v1.0
MDLHGAASHSESGKLEQVVSQFLLKSLHIILDSRIPSLCSPRDRTCDSITRVKKSDKWFNLVLGDRPAALDNLHFWHRNLMDPMIIDIILVQQGSTTSSS
VDNLLSASPESAAATESVIERWHVQFESPITSASRPGEGSASYKKTYKKSIIFLRSLYLQMRLLPAYRIFRQLSSSSQPYNFDIIYKVSSFSEPFSRAEE
EMMKEYSFVPIEALPGRLHVSVSYRAQLSQFNLQPLTTMPPKIISDYVGSPAIDPLRYFPSSYKGDSAISFPTKGIHSPTSVPFQRPHSWTSGFYKPPSN
TGSQPFVGSPPIFRMSPLSYDSPSPPMDRIQSLRRPHQRTPFQDECQLSPPFSPSVSPSTPTYLRKIDSPRQIHAGSESAPVTIPFQMAGRSSRYISPNF
SDPNKHSLPPLSPRSTRNDHSSNSNESPSAIRLMKKSEASKPGDLSYAGHKVLRDNRDDSGRFSGLLSSRSSSKLSFQDDIDDCDFSCPFDVDDVDTPDS
QISQNQDGKRSLESTSLGRKSQDAAVGVLVHMLRNAPPLRQDSSCYSSHSLRAEVEDGGGSATTTASGFFMARRTADALEELRSYREMRDLLLSKSGTRV
LAREPP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G49590 ATG13 autophagy-related 13, Autophag... Lus10019097
[exp]
0 1
AT5G45900 ATAPG7, ATG7, A... AUTOPHAGY-RELATED 7, AUTOPHAGY... Lus10015289
[exp]
4.0 0.8037
AT3G47550 RING/FYVE/PHD zinc finger supe... Lus10035010
[exp]
13.4 0.7662
AT4G11740 SAY1 Ubiquitin-like superfamily pro... Lus10029591
[exp]
14.3 0.8155
AT5G07920 ATDGK1, DGK1 DIACYLGLYCEROL KINASE 1, diacy... Lus10021625
[exp]
23.9 0.7344
AT1G15780 unknown protein Lus10015323
[exp]
24.2 0.7493
AT5G17310 AtUGP2, UGP2 UDP-glucose pyrophosphorylase ... Lus10020788
[exp]
25.4 0.8021
AT5G44240 ALA2 aminophospholipid ATPase 2 (.1... Lus10018620
[exp]
27.9 0.7426
AT5G15400 U-box domain-containing protei... Lus10005222
[exp]
42.0 0.7623
AT3G58670 Protein of unknown function (D... Lus10029828
[exp]
54.9 0.6944
AT1G21380 Target of Myb protein 1 (.1) Lus10042770
[exp]
55.5 0.7636

Lus10019097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.